ViewGene
Locus Name:
GeneID:
Location:

GeneID:4674
TrivialName: PA14_09960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09960
PAO1 Ortholog Locus:PA4169
Sequence Length:429
Protein Length:142
Start: 855942
Stop: 856370
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07556.1|AE004833_7 (AE004833) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/142 (99%), Positives = 141/142 (99%)
Sequence:
ATGAGAAACGACACCCGCCTCTCGCGCATGCTCCATGTGCTGATCCATATGGCCCGCCACGAAGGGCCGGCG
ACTTCCGAAGCCATCGCGCAGATGCTCGGCACCAACCCGGTGGTGGTGCGACGGACCATGGCGCTGCTGAAG
AACGAAGGCTACGTGAGTTCGGAGAAGGGCCATCGCGGCGGTTGGCGGCTGGCCAAGCCGTTGGCGGACATC
ACCTTGCTGGATATCCACCAGGCGCTGGGAGCGTCCTCGATCTTCGCCATCGGCCTGTCTACCGATCATCCG
GAATGCCTGGTCGAGCAGGCGGTCAACGAAGCGCTCGGCGAGGCGTTCGAGGCGGCGCAGGCGTTGCTCCTG
GAGCGCCTGGGGAGCGTCACGCTGGAGCAGTTGGCGAGCGAGTTCGAGCGCCGCTATCGGCCCTGCTGA
Translation:
MRNDTRLSRMLHVLIHMARHEGPATSEAIAQMLGTNPVVVRRTMALLKNEGYVSSEKGHRGGWRLAKPLADI
TLLDIHQALGASSIFAIGLSTDHPECLVEQAVNEALGEAFEAAQALLLERLGSVTLEQLASEFERRYRPC*
AnnotationID:4680GeneID:4674
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:50
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4169
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1959
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1959, Predicted transcriptional regulator [Transcription]
CD-Length = 150 residues,  96.7% aligned
Score =  103 bits (257), Expect = 1e-23
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 7/145 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9349




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26489




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36809




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4674_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4674
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7041
                           PA4169_tr
                           translation of PA4169
                           142
                           99.29
                           99.29
                           0
                           713.0
     

     
     
186066
                           gb|AAG07556.1|AE004833_7
                           (AE004833) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           142
                           99.29
                           99.29
                           0
                           713.0
     

     
     
186067
                           gb|AAL41259.1|
                           (AE008996) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           152
                           59.21
                           72.36
                           10
                           450.0
     

     
     
186068
                           gb|AAK86053.1|
                           (AE007963) AGR_C_402p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           152
                           59.21
                           72.36
                           10
                           450.0
     

     
     
186069
                           gb|AAM42815.1|
                           (AE012475) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           157
                           54.77
                           67.51
                           15
                           439.0
     

     






      

          
GC ORFID: 47676How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4169Glimmer Score: 

          
Start: 4097995Stop: 4097567

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4169 translation of PA4169Homolog Bit Score 279.0

          
Other Homologs:  t_PA4169 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGAAACGACACCCGCCTCTCGCGCATGCTCCATGTGCTGATCCATATGGCCCGCCACGAAGGGCCGGCG 
ACTTCCGAAGCCATCGCGCAGATGCTCGGCACCAACCCGGTGGTGGTGCGACGGACCATGGCGCTGCTGAAG 
AACGAAGGCTACGTGAGTTCGGAGAAGGGCCATCGCGGCGGTTGGCGGCTGGCCAAGCCGTTGGCGGACATC 
ACCTTGCTGGATATCCACCAGGCGCTGGGAGCGTCCTCGATCTTCGCCATCGGCCTGTCTACCGATCATCCG 
GAATGCCTGGTCGAGCAGGCGGTCAACGAAGCGCTCGGCGAGGCGTTCGAGGCGGCGCAGGCGTTGCTCCTG 
GAGCGCCTGGGGAGCGTCACGCTGGAGCAGTTGGCGAGCGAGTTCGAGCGCCGCTATCGGCCCTGCTGA