ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4672

TrivialName: PA14_42290

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_42290

PAO1 Ortholog Locus: PA1721

Sequence Length: 432

Protein Length: 143

Start: 3771431

Stop: 3771000

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05110.1|AE004598_9 (AE004598) type III export protein PscH [Pseudomonas aeruginosa PAO1] Identities = 143/143 (100%), Positives = 143/143 (100%)

Sequence:

ATGAGCCGCATCGACACGCCGCCGGGATTCGCCGTCTATCCGTCGGCCAGTCCAAAGGCGGCGAACCTGCCG
GCTGTCGATCAGGTGCTGGCTTTCGAGCAGGCCCTCGGCGGCGAGCCGCCGGCGGCCGGACGCCGCCTGGCC
GGGTTGGAGAACGGCGCTCTCGGCGAGCGCCTGCTGCAGCGCTTTGCCCAGCCGCTGCAAGGGTTGGAGGCG
GACCGCCTGGAGCTGAAGGCGATGCTCCGTGCGGAACTGCCGCTGGGGCGCCAGCAGCAAACCTTTCTCCTC
CAGTTGCTCGGTGCAGTCGAGCATGCGCCGGGCGGCGAATACCTGGCGCAACTGGCGCGTCGCGAATTGCAG
GTGCTGATCCCGCTCAACGGCATGCTCGACAACCTCGTGCGCAACAGCCACAAACTCGACCTGGAGTCATGA

Translation:

MSRIDTPPGFAVYPSASPKAANLPAVDQVLAFEQALGGEPPAAGRRLAGLENGALGERLLQRFAQPLQGLEA
DRLELKAMLRAELPLGRQQQTFLLQLLGAVEHAPGGEYLAQLARRELQVLIPLNGMLDNLVRNSHKLDLES*

AnnotationID:4678 GeneID:4672

AnnotatorUID: danlee

Modification Date/Time: 2006-01-30 11:11:38

Gene Name: pscH

Confidence Code: 1

GeneProduct: type III export protein PscH

Cell Localization: (1) Cytoplasmic

Synonyms: yscH

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (19) Protein secretion/export apparatus

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Type III Secretion

Homology:

>gb|AAO18029.1| (AY144116) LscH [Photorhabdus luminescens]
          Length = 188

 Score = 87.4 bits (215), Expect = 2e-17
 Identities = 42/70 (60%), Positives = 54/70 (77%)

>gb|AAC37025.1| (M74011) yscH gene product [Yersinia enterocolitica]
          Length = 165

 Score = 55.5 bits (132), Expect = 8e-08
 Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 5/92 (5%)

Structural Features:

CDD Search: No hits at any threshold.

Genomic Context:

Comment:

ReferenceID:9345

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:26485

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36584

Author/Investigator(s): Yahr TL, Goranson J, Frank DW.

Title: Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.

PubMed: 8971719

MedLine:

Source:

Mol Microbiol. 1996 Dec;22(5):991-1003.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract`

Homologs By Global Alignment

Gene ID:4672

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

7039 PA1721_tr translation of PA1721 143 99.99 99.99 0 714.0

186042 gb|AAG05110.1|AE004598_9 (AE004598) type III export protein PscH [Pseudomonas aeruginosa PAO1] 143 99.99 99.99 0 714.0

186043 gb|AAC44779.1| (U56077) PscH [Pseudomonas aeruginosa] 143 99.30 99.30 0 708.0

GC ORFID: `47674`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1721`	Glimmer Score:
Start: `1182478`	Stop: `1182909`
Length: `432`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1721 translation of PA1721`	Homolog Bit Score `279.0`
Other Homologs: `t_PA1721 (ORF: GLIMMER)`
GC ORF Sequence
`ATGAGCCGCATCGACACGCCGCCGGGATTCGCCGTCTATCCGTCGGCCAGTCCAAAGGCGGCGAACCTGCCG GCTGTCGATCAGGTGCTGGCTTTCGAGCAGGCCCTCGGCGGCGAGCCGCCGGCGGCCGGACGCCGCCTGGCC GGGTTGGAGAACGGCGCTCTCGGCGAGCGCCTGCTGCAGCGCTTTGCCCAGCCGCTGCAAGGGTTGGAGGCG GACCGCCTGGAGCTGAAGGCGATGCTCCGTGCGGAACTGCCGCTGGGGCGCCAGCAGCAAACCTTTCTCCTC CAGTTGCTCGGTGCAGTCGAGCATGCGCCGGGCGGCGAATACCTGGCGCAACTGGCGCGTCGCGAATTGCAG GTGCTGATCCCGCTCAACGGCATGCTCGACAACCTCGTGCGCAACAGCCACAAACTCGACCTGGAGTCATGA`