ViewGene

Locus Name:
GeneID:
Location:

GeneID:4670
TrivialName: PA14_45850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45850
PAO1 Ortholog Locus:PA1439
Sequence Length:408
Protein Length:135
Start: 4074520
Stop: 4074927
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04828.1|AE004573_7 (AE004573) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
GTGGCGCAGCGGGAAATTCGCCCGAGCGCTCGTGCCTGGGTGCGCTATAGCCTCCAGGCCGTGGGTTTCCTA
AGCGTAGCCCTGGGCGTGATCGGCATCTTCCTGCCGGTGCTGCCGACCACGCCTTTCCTGCTCCTCGCGGCG
GCCTGCTTCATGCGCAGCTCGCCGCGCTTCTACCACTGGCTGGTCGGCCATCCACGGCTCGGCCCGTGGATC
CGCGACTATCTCGACGGCGAAGGCATCCCGCTCAAGGGCAAGGTCTACGCCATCGGCCTGATGTGGGCCAGC
ATCGCCCTTTCCTGCTACCTGGTCCGACGCCCCTGGGCCCAGGGCTTCATGCTGACCAGCGCGGTACTGGTC
AGCATCTATATCCTCCGCCAGAAGACCCGCCCGCCGCACGACGCCTGA
Translation:
MAQREIRPSARAWVRYSLQAVGFLSVALGVIGIFLPVLPTTPFLLLAAACFMRSSPRFYHWLVGHPRLGPWI
RDYLDGEGIPLKGKVYAIGLMWASIALSCYLVRRPWAQGFMLTSAVLVSIYILRQKTRPPHDA*
AnnotationID:4676GeneID:4670
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 09:09:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1439
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAB84037.1| (AL162754) putative membrane protein [Neisseria meningitidis Z2491]
          Length = 119

 Score = 97.8 bits (242), Expect = 9e-21
 Identities = 49/118 (41%), Positives = 73/118 (61%), Gaps = 2/118 (1%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:15150
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26482
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37357
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4670_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4670

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7037 PA1439_tr translation of PA1439 135 99.99 99.99 0 714.0
186037 gb|AAG04828.1|AE004573_7 (AE004573) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 135 99.25 99.99 0 711.0
186038 gb|AAO55162.1| (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 135 73.33 80.74 2 519.0
186039 gb|AAN70092.1|AE016648_10 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 137 69.34 75.91 18 489.0
186040 gb|AAR34244.1| (AE017210) conserved hypothetical protein [Geobacter sulfurreducens PCA] 141 43.97 60.99 8 306.0
GC ORFID: 47672How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1439Glimmer Score:
Start: 879389Stop: 878982
Length: 408
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1439 translation of PA1439Homolog Bit Score 279.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene5983 (ORF: BLASTX 210.0)
GC ORF Sequence
GTGGCGCAGCGGGAAATTCGCCCGAGCGCTCGTGCCTGGGTGCGCTATAGCCTCCAGGCCGTGGGTTTCCTA
AGCGTAGCCCTGGGCGTGATCGGCATCTTCCTGCCGGTGCTGCCGACCACGCCTTTCCTGCTCCTCGCGGCG
GCCTGCTTCATGCGCAGCTCGCCGCGCTTCTACCACTGGCTGGTCGGCCATCCACGGCTCGGCCCGTGGATC
CGCGACTATCTCGACGGCGAAGGCATCCCGCTCAAGGGCAAGGTCTACGCCATCGGCCTGATGTGGGCCAGC
ATCGCCCTTTCCTGCTACCTGGTCCGACGCCCCTGGGCCCAGGGCTTCATGCTGACCAGCGCGGTACTGGTC
AGCATCTATATCCTCCGCCAGAAGACCCGCCCGCCGCACGACGCCTGA