ViewGene
Locus Name:
GeneID:
Location:

GeneID:4669
TrivialName: PA14_07550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07550
PAO1 Ortholog Locus:PA0578
Sequence Length:450
Protein Length:149
Start: 651650
Stop: 651201
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03967.1|AE004494_3 (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 149/149 (100%)
Sequence:
ATGAGCGAAATCAAATCCCGCCTCCTCGACGCCGTCAAGGTCGCCATGCGCGCCCAGGACAAGCCGCGGCTG
ACCACGTTGCGCCTGGCCCTCGCGGACATCAAGCGCGTCGAAGTCGACGAACGCATCGAGGTGGATGACGCC
CGAGCCCTGCTGATCCTCGACCGGATGATCAAGCAGCGCCGCGACGCCCAGCGCCAGTTCAGCGACGCCGGC
CGCCAGGACCTCGCCGAGGTCGAGGCCGCCGAGATCCTCGTGCTCCAGGACTTCATGCCCAAGCCCCTGGAC
GACCATGAGATCAACGCCCTGATCGAGCGCAGCATCGTCGACAGCGGCGCCCAGGGTCCGCAGGACATGGGC
AAGGCGATGAACCTGCTGCGACCGCAGGTCCAGGGTCGCGTCGACATGGCACAGGTCAGCCAGCGCCTGAAG
GCGCGCCTCTCCTCCTGA
Translation:
MSEIKSRLLDAVKVAMRAQDKPRLTTLRLALADIKRVEVDERIEVDDARALLILDRMIKQRRDAQRQFSDAG
RQDLAEVEAAEILVLQDFMPKPLDDHEINALIERSIVDSGAQGPQDMGKAMNLLRPQVQGRVDMAQVSQRLK
ARLSS*
AnnotationID:4675GeneID:4669
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0578
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9339




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26480




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33856




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4669_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4669
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7036
                           PA0578_tr
                           translation of PA0578
                           149
                           99.32
                           99.99
                           0
                           715.0
     

     
     
186017
                           gb|AAG03967.1|AE004494_3
                           (AE004494) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           149
                           99.32
                           99.99
                           0
                           715.0
     

     
     
186018
                           dbj|BAC58669.1|
                           (AP005074) conserved hypothetical protein [Vibrio parahaemolyticus]
                           149
                           53.02
                           75.16
                           2
                           393.0
     

     
     
186019
                           gb|AAO09144.1|AE016799_42
                           (AE016799) Conserved hypothetical protein [Vibrio vulnificus CMCP6]
                           149
                           53.02
                           76.51
                           2
                           385.0
     

     
     
186020
                           dbj|BAC93327.1|
                           (AP005332) conserved hypothetical protein [Vibrio vulnificus YJ016]
                           149
                           53.02
                           76.51
                           2
                           385.0
     

     






      

          
GC ORFID: 47671How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0578Glimmer Score: 

          
Start: 6452993Stop: 6452544

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0578 translation of PA0578Homolog Bit Score 280.0

          
Other Homologs:  t_PA0578 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAAATCAAATCCCGCCTCCTCGACGCCGTCAAGGTCGCCATGCGCGCCCAGGACAAGCCGCGGCTG 
ACCACGTTGCGCCTGGCCCTCGCGGACATCAAGCGCGTCGAAGTCGACGAACGCATCGAGGTGGATGACGCC 
CGAGCCCTGCTGATCCTCGACCGGATGATCAAGCAGCGCCGCGACGCCCAGCGCCAGTTCAGCGACGCCGGC 
CGCCAGGACCTCGCCGAGGTCGAGGCCGCCGAGATCCTCGTGCTCCAGGACTTCATGCCCAAGCCCCTGGAC 
GACCATGAGATCAACGCCCTGATCGAGCGCAGCATCGTCGACAGCGGCGCCCAGGGTCCGCAGGACATGGGC 
AAGGCGATGAACCTGCTGCGACCGCAGGTCCAGGGTCGCGTCGACATGGCACAGGTCAGCCAGCGCCTGAAG 
GCGCGCCTCTCCTCCTGA