ViewGene
Locus Name:
GeneID:
Location:

GeneID:4668
TrivialName: PA14_57520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57520
PAO1 Ortholog Locus:PA4427
Sequence Length:408
Protein Length:135
Start: 5125116
Stop: 5124709
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07815.1|AE004857_6 (AE004857) stringent starvation protein B [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
ATGAATTCCAGCCGTCCCTATCTGGTCCGCGCGCTCTATGAATGGATCGTCGACAACGATTGCACGCCGCAT
ATCCTGGTGAACGCAGAGTTCGCCGGGGTAAAGGTGCCTCCGGGCTATGCCAGCGATGGGCAGATCGTGCTC
AATGTCTCGCCCTCTGCCGTGCGGCATCTGCACATGGACAACGAGGCGGTCAGCTTCGAGGGGCGTTTCGGC
GGCGTGGCGCAGAGCCTGTACATTCCAGCGCTGGCGGTAATGGCCATCTACGCCCGGGAAAACGGCCAGGGC
ATGGTCTTCGATCTGGAGCAGCCGGGTCCGGTGGACGACGAGCCGGGCGATGACGATGGTGGGCCGTCCGAT
GAGCCGCCGCGTCCCAGTGGCAGGCCATCCCTGAAGGTGGTCAAGTAA
Translation:
MNSSRPYLVRALYEWIVDNDCTPHILVNAEFAGVKVPPGYASDGQIVLNVSPSAVRHLHMDNEAVSFEGRFG
GVAQSLYIPALAVMAIYARENGQGMVFDLEQPGPVDDEPGDDDGGPSDEPPRPSGRPSLKVVK*
AnnotationID:4674GeneID:4668
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:31
Gene Name:sspB
Confidence Code:2
GeneProduct:stringent starvation protein B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04386,COG2969
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57872.1| (AE016871) stringent starvation protein B [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 137

 Score =  211 bits (537), Expect = 6e-55
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 4/138 (2%)

>gb|AAN66945.1|AE016322_12 (AE016779) stringent starvation protein B [Pseudomonas putida
           KT2440]
          Length = 153

 Score =  206 bits (525), Expect = 1e-53
 Identities = 104/143 (72%), Positives = 116/143 (81%), Gaps = 8/143 (5%)







 
Structural Features:
pfam04386, SspB, Stringent starvation protein B. 
CD-Length = 138 residues, 100.0% aligned
Score =  197 bits (501), Expect = 1e-51
Identities = 84/138 (60%), Positives = 101/138 (73%), Gaps = 3/138 (2%)

COG2969, SspB, Stringent starvation protein B 
CD-Length = 155 residues,  97.4% aligned
Score =  187 bits (477), Expect = 6e-49
Identities = 72/151 (47%), Positives = 96/151 (63%), Gaps = 16/151 (10%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9337




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26478




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31467




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4668_cdd.html


    		




 
URL:

















    ReferenceID:32810




  
Author/Investigator(s):
        Williams MD, Ouyang TX, Flickinger MC.





  
Title:
        Starvation-induced expression of SspA and SspB: the effects of a null mutation in sspA on Escherichia coli protein synthesis and survival during growth and prolonged starvation.




  
PubMed:
        8022275


MedLine:
        




    
Source:
Mol Microbiol. 1994 Mar;11(6):1029-43.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8022275









           
Homologs By Global Alignment 

           

       



     
Gene ID:4668
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7035
                           PA4427_tr
                           translation of PA4427
                           135
                           99.99
                           99.99
                           0
                           716.0
     

     
     
185979
                           gb|AAG07815.1|AE004857_6
                           (AE004857) stringent starvation protein B [Pseudomonas aeruginosa PAO1]
                           135
                           99.99
                           99.99
                           0
                           716.0
     

     
     
185980
                           gb|AAO57872.1|
                           (AE016871) stringent starvation protein B [Pseudomonas syringae pv. tomato str. DC3000]
                           138
                           75.36
                           84.05
                           4
                           542.0
     

     
     
185981
                           gb|AAN66945.1|AE016322_12
                           (AE016779) stringent starvation protein B [Pseudomonas putida KT2440]
                           154
                           68.18
                           76.62
                           20
                           534.0
     

     
     
185984
                           gb|AAO91240.1|
                           (AE016965) stringent starvation protein B [Coxiella burnetii RSA 493]
                           147
                           49.65
                           63.94
                           21
                           357.0
     

     






      

          
GC ORFID: 47670How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4427Glimmer Score: 

          
Start: 4388795Stop: 4388388

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4427 translation of PA4427Homolog Bit Score 280.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2034 (ORF: BLASTX 212.0), t_PA4427 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTCCAGCCGTCCCTATCTGGTCCGCGCGCTCTATGAATGGATCGTCGACAACGATTGCACGCCGCAT 
ATCCTGGTGAACGCAGAGTTCGCCGGGGTAAAGGTGCCTCCGGGCTATGCCAGCGATGGGCAGATCGTGCTC 
AATGTCTCGCCCTCTGCCGTGCGGCATCTGCACATGGACAACGAGGCGGTCAGCTTCGAGGGGCGTTTCGGC 
GGCGTGGCGCAGAGCCTGTACATTCCAGCGCTGGCGGTAATGGCCATCTACGCCCGGGAAAACGGCCAGGGC 
ATGGTCTTCGATCTGGAGCAGCCGGGTCCGGTGGACGACGAGCCGGGCGATGACGATGGTGGGCCGTCCGAT 
GAGCCGCCGCGTCCCAGTGGCAGGCCATCCCTGAAGGTGGTCAAGTAA