ViewGene
Locus Name:
GeneID:
Location:

GeneID:4667
TrivialName: PA14_27070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27070
PAO1 Ortholog Locus:PA2864
Sequence Length:435
Protein Length:144
Start: 2352491
Stop: 2352925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06252.1|AE004713_1 (AE004713) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
ATGAATCCACTGATCAAGACCATCCTGTCGACCAACGCCGGTGCCGGCCTGGCCATCCTGCGTATCGTCACC
GGTCTTACCCTGATGTCCCACGGTTCGCAAAAGCTCTTCGGCATGTTCGGCGGCGCCGGCCTGAACGGCATG
GCGCAGTGGTTCGAATCCATCGGCCTGACCCCTGGCTACCTGCTGGCGACCCTGGCCGGCAGCGCCGAGTTC
TTCGGCGGCCTGGCGCTGGTGATCGGCCTGCTGGTGCGTCCGGCGTCGGTGGTGGTGGGCTTCACCATGATC
GTGGCGATCTTCAGCGTGCACATCGGCAATGGCTTCTTCATCACCGACAACGGCTATGAATATGCCCTGACC
CTGCTGATGATCAGCGTGGCGCTGCTGATCGATGGCGCCGGCAAGTTCTCGCTGGACGGCAAGCTGTCCCGC
TGA
Translation:
MNPLIKTILSTNAGAGLAILRIVTGLTLMSHGSQKLFGMFGGAGLNGMAQWFESIGLTPGYLLATLAGSAEF
FGGLALVIGLLVRPASVVVGFTMIVAIFSVHIGNGFFITDNGYEYALTLLMISVALLIDGAGKFSLDGKLSR
*
AnnotationID:4673GeneID:4667
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2864
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04173,COG2259
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55772.1| (AE016863) DoxD-like family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 144

 Score =  186 bits (472), Expect = 3e-47
 Identities = 89/144 (61%), Positives = 118/144 (81%)








 
Structural Features:
pfam04173, DoxD, DoxD-like family.
CD-Length = 122 residues,  99.2% aligned
Score = 76.1 bits (187), Expect = 1e-15
Identities = 60/125 (48%), Positives = 78/125 (62%), Gaps = 4/125 (3%)

COG2259, COG2259, Predicted membrane protein
CD-Length = 142 residues,  93.7% aligned
Score = 73.9 bits (181), Expect = 7e-15
Identities = 62/138 (44%), Positives = 81/138 (58%), Gaps = 6/138 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9335




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26476




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36201




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4667_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4667
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7034
                           PA2864_tr
                           translation of PA2864
                           144
                           99.99
                           99.99
                           0
                           716.0
     

     
     
185968
                           gb|AAG06252.1|AE004713_1
                           (AE004713) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           144
                           99.99
                           99.99
                           0
                           716.0
     

     
     
185970
                           gb|AAO55772.1|
                           (AE016863) DoxD-like family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           144
                           61.80
                           81.94
                           0
                           472.0
     

     
     
185969
                           gb|AAN67926.1|AE016425_3
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           145
                           60.68
                           80.00
                           1
                           474.0
     

     
     
185971
                           gb|AAN56317.1|AE015770_3
                           (AE015770) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           147
                           55.78
                           70.74
                           3
                           428.0
     

     






      

          
GC ORFID: 47669How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2864Glimmer Score: 

          
Start: 2601435Stop: 2601001

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2864 translation of PA2864Homolog Bit Score 280.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1046 (ORF: BLASTX 191.0), t_PA2864 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCCACTGATCAAGACCATCCTGTCGACCAACGCCGGTGCCGGCCTGGCCATCCTGCGTATCGTCACC 
GGTCTTACCCTGATGTCCCACGGTTCGCAAAAGCTCTTCGGCATGTTCGGCGGCGCCGGCCTGAACGGCATG 
GCGCAGTGGTTCGAATCCATCGGCCTGACCCCTGGCTACCTGCTGGCGACCCTGGCCGGCAGCGCCGAGTTC 
TTCGGCGGCCTGGCGCTGGTGATCGGCCTGCTGGTGCGTCCGGCGTCGGTGGTGGTGGGCTTCACCATGATC 
GTGGCGATCTTCAGCGTGCACATCGGCAATGGCTTCTTCATCACCGACAACGGCTATGAATATGCCCTGACC 
CTGCTGATGATCAGCGTGGCGCTGCTGATCGATGGCGCCGGCAAGTTCTCGCTGGACGGCAAGCTGTCCCGC 
TGA