ViewGene
Locus Name:
GeneID:
Location:

GeneID:4666
TrivialName: PA14_46770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46770
PAO1 Ortholog Locus:PA1354
Sequence Length:426
Protein Length:141
Start: 4166280
Stop: 4166705
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04743.1|AE004565_2 (AE004565) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGAGATTCATGGTGATCGTCAAGGCCACCCAGGCTTCCGAAGCCGGCGAGATGCCCAGCGAGGAACTGCTC
GCGGCGATGGGCCGCTACAACGAGGAACTGGTCAAGGCCGGGGTGATGCTCGCCGGCGAAGGGCTACAGCCC
AGCGCCAAGGGCGCCCGGGTGCGTTTCTCCGGCAACGCGCGGACGGTGATCGACGGCCCCTTCGCCGAGACC
CGCGAGCTGATCGCCGGTTTCTGGATGTTCCAGGTGGCCTCCCTGGAAGAGGCCATCGAGTGGGTCAAGCGA
TGCCCGAACCCATTCGACGGCGAATCCGAGATCGAGATCCGCCAGGTCTTCGAGGCCGAGGACTTCGGCGAG
GAGTTCACCCCGGAACTGCGCGAGCGCGAGGAGCGCCTGCGCGCCGAGCTGGAAAAACGCAACTGA
Translation:
MRFMVIVKATQASEAGEMPSEELLAAMGRYNEELVKAGVMLAGEGLQPSAKGARVRFSGNARTVIDGPFAET
RELIAGFWMFQVASLEEAIEWVKRCPNPFDGESEIEIRQVFEAEDFGEEFTPELREREERLRAELEKRN*
AnnotationID:4672GeneID:4666
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 09:09:12
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1354
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9333




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26474




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37439




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4666_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4666
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7033
                           PA1354_tr
                           translation of PA1354
                           141
                           99.99
                           99.99
                           0
                           715.0
     

     
     
185957
                           gb|AAG04743.1|AE004565_2
                           (AE004565) hypothetical protein PA1354 [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           715.0
     

     
     
185958
                           dbj|BAC91888.1|
                           (AP006581) gll3947 [Gloeobacter violaceus PCC 7421]
                           143
                           72.72
                           86.01
                           2
                           550.0
     

     
     
185959
                           emb|CAE40335.1|
                           (BX640425) conserved hypothetical protein [Bordetella parapertussis]
                           144
                           67.36
                           78.47
                           4
                           487.0
     

     
     
185960
                           emb|CAE31635.1|
                           (BX640440) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           144
                           66.66
                           78.47
                           4
                           485.0
     

     






      

          
GC ORFID: 47668How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1354Glimmer Score: 

          
Start: 787629Stop: 787204

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1354 translation of PA1354Homolog Bit Score 280.0

          
Other Homologs:  t_PA1354 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGATTCATGGTGATCGTCAAGGCCACCCAGGCTTCCGAAGCCGGCGAGATGCCCAGCGAGGAACTGCTC 
GCGGCGATGGGCCGCTACAACGAGGAACTGGTCAAGGCCGGGGTGATGCTCGCCGGCGAAGGGCTACAGCCC 
AGCGCCAAGGGCGCCCGGGTGCGTTTCTCCGGCAACGCGCGGACGGTGATCGACGGCCCCTTCGCCGAGACC 
CGCGAGCTGATCGCCGGTTTCTGGATGTTCCAGGTGGCCTCCCTGGAAGAGGCCATCGAGTGGGTCAAGCGA 
TGCCCGAACCCATTCGACGGCGAATCCGAGATCGAGATCCGCCAGGTCTTCGAGGCCGAGGACTTCGGCGAG 
GAGTTCACCCCGGAACTGCGCGAGCGCGAGGAGCGCCTGCGCGCCGAGCTGGAAAAACGCAACTGA