ViewGene
Locus Name:
GeneID:
Location:

GeneID:4665
TrivialName: PA14_52290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52290
PAO1 Ortholog Locus:PA0925
Sequence Length:408
Protein Length:135
Start: 4640103
Stop: 4640510
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04314.1|AE004527_1 (AE004527) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/135 (99%), Positives = 135/135 (100%)
Sequence:
ATGAAACCCTCTCTCGCCCTCTTCGCCTCCGCCGCCCTGGTCCTGGGCGGTTGCGCCAGCCAGGAGACCACC
CTGGAAACCGAGCAGGCCTACCAGGTCGACTGGGTCGGCGCACAACCGACGATGGACTACAGCCACATCAGC
CTGACCTTCGACGGCCAGGGCCGTGCCTTCGGCAACGGCGGCTGCAACCACTGGTTCGCCAGCTACACCTTG
CAGGACGACCTCCTTCAGTTCGGCGCCATCGGCAGCACCCGCCGCCTGTGCGCGGCGGAGATCATGGAGCAG
GAACGGCGCTTCCTGGCCCTGCTGCAGAGCGTCCAGCACTGGGACATTTCGCCGTCCGACGAGCTGCGCCTG
TGGCCGGCCGAAGGCAAGCCGCTGCGCCTGGTCCCCGAGCACGACTGA
Translation:
MKPSLALFASAALVLGGCASQETTLETEQAYQVDWVGAQPTMDYSHISLTFDGQGRAFGNGGCNHWFASYTL
QDDLLQFGAIGSTRRLCAAEIMEQERRFLALLQSVQHWDISPSDELRLWPAEGKPLRLVPEHD*
AnnotationID:4671GeneID:4665
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 16:04:35
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0925
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3187
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3187, HslJ, Heat shock protein [Posttranslational modification]. Score: 118, 2e-28
pfam03724, META, Domain of unknown function (306). Score: 89.2, 1e-19






   
Genomic Context:






   
Comment:


















    ReferenceID:9331




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26472




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4665
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7032
                           PA0925_tr
                           translation of PA0925
                           135
                           99.25
                           99.99
                           0
                           717.0
     

     
     
185954
                           gb|AAG04314.1|AE004527_1
                           (AE004527) hypothetical protein PA0925 [Pseudomonas aeruginosa PAO1]
                           135
                           99.25
                           99.99
                           0
                           717.0
     

     
     
185955
                           gb|AAN67268.1|AE016353_8
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           146
                           47.94
                           66.43
                           14
                           398.0
     

     
     
185956
                           gb|AAO55209.1|
                           (AE016861) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           47.40
                           65.18
                           0
                           374.0
     

     






      

          
GC ORFID: 47667How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0925Glimmer Score: 

          
Start: 313804Stop: 313397

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0925 translation of PA0925Homolog Bit Score 280.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene5934 (ORF: BLASTX 144.0), t_PA0925 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACCCTCTCTCGCCCTCTTCGCCTCCGCCGCCCTGGTCCTGGGCGGTTGCGCCAGCCAGGAGACCACC 
CTGGAAACCGAGCAGGCCTACCAGGTCGACTGGGTCGGCGCACAACCGACGATGGACTACAGCCACATCAGC 
CTGACCTTCGACGGCCAGGGCCGTGCCTTCGGCAACGGCGGCTGCAACCACTGGTTCGCCAGCTACACCTTG 
CAGGACGACCTCCTTCAGTTCGGCGCCATCGGCAGCACCCGCCGCCTGTGCGCGGCGGAGATCATGGAGCAG 
GAACGGCGCTTCCTGGCCCTGCTGCAGAGCGTCCAGCACTGGGACATTTCGCCGTCCGACGAGCTGCGCCTG 
TGGCCGGCCGAAGGCAAGCCGCTGCGCCTGGTCCCCGAGCACGACTGA