ViewGene
Locus Name:
GeneID:
Location:

GeneID:4663
TrivialName: PA14_73100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73100
PAO1 Ortholog Locus:PA5543
Sequence Length:399
Protein Length:132
Start: 6509474
Stop: 6509076
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08928.1|AE004966_10 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/132 (99%), Positives = 131/132 (99%)
Sequence:
GTGATCGCGCTGTGCCTGGGCATGGCCGGCAGCGTCTGGGCGACGCTGCCGCTGCAGTCGTTCACCCTGGCC
TGGCAACACACGGTCGAGAAGGTGCTCTGGGAAGAAGACTATCGCCTGAGCGAGCGCGGCCTGCTGCTGGAA
GAGGCCCGGGTGCGGGGCAGCGGGGCGGGGATGGAGATTCCCGAGGGCGCCGTGCTGCGTGACGGCGCCTGG
CATTACCACCGTGGGGTGCCGCCGCTGCAACCGTTGCGGCTGGGGCGCACACCGGAGGCCGGCGACTACCGG
ATCTGCCGTCAGGGGCGCTGCGATGCGCTGGCGCGCTGGATCGGTCCGCCGGACCCTGAGCGCCCGGCGGTC
GAACTCTGGGCGTGTCCGATACGGGGCCCGAGCGACTGA
Translation:
MIALCLGMAGSVWATLPLQSFTLAWQHTVEKVLWEEDYRLSERGLLLEEARVRGSGAGMEIPEGAVLRDGAW
HYHRGVPPLQPLRLGRTPEAGDYRICRQGRCDALARWIGPPDPERPAVELWACPIRGPSD*
AnnotationID:4669GeneID:4663
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:16
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5543
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15148




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26468




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33321




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4663_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4663
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7031
                           PA5543_tr
                           translation of PA5543
                           132
                           99.24
                           99.24
                           0
                           718.0
     

     
     
185943
                           gb|AAG08928.1|AE004966_10
                           (AE004966) hypothetical protein PA5543 [Pseudomonas aeruginosa PAO1]
                           132
                           98.48
                           99.24
                           0
                           715.0
     

     
     
185944
                           gb|AAN69550.1|AE016588_7
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           139
                           57.55
                           71.22
                           8
                           456.0
     

     
     
185945
                           gb|AAN53536.1|AE015494_4
                           (AE015494) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           140
                           52.14
                           70.00
                           8
                           406.0
     

     






      

          
GC ORFID: 47665How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5543Glimmer Score: 

          
Start: 5773163Stop: 5772765

          
Length: 399


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5543 translation of PA5543Homolog Bit Score 281.0

          
Other Homologs:  t_PA5543 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATCGCGCTGTGCCTGGGCATGGCCGGCAGCGTCTGGGCGACGCTGCCGCTGCAGTCGTTCACCCTGGCC 
TGGCAACACACGGTCGAGAAGGTGCTCTGGGAAGAAGACTATCGCCTGAGCGAGCGCGGCCTGCTGCTGGAA 
GAGGCCCGGGTGCGGGGCAGCGGGGCGGGGATGGAGATTCCCGAGGGCGCCGTGCTGCGTGACGGCGCCTGG 
CATTACCACCGTGGGGTGCCGCCGCTGCAACCGTTGCGGCTGGGGCGCACACCGGAGGCCGGCGACTACCGG 
ATCTGCCGTCAGGGGCGCTGCGATGCGCTGGCGCGCTGGATCGGTCCGCCGGACCCTGAGCGCCCGGCGGTC 
GAACTCTGGGCGTGTCCGATACGGGGCCCGAGCGACTGA