ViewGene

Locus Name:
GeneID:
Location:

GeneID:4662
TrivialName: PA14_68640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68640
PAO1 Ortholog Locus:PA5196
Sequence Length:435
Protein Length:144
Start: 6120787
Stop: 6121221
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08581.1|AE004932_8 (AE004932) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/144 (97%), Positives = 143/144 (99%)
Sequence:
ATGGTCGGGCTGCGCGCGAAGATCGACACCGGCGCCAGCACCTCCAGCCTACATGCCTCGGACATCGTTCCC
TTCGAGCGCGACGGCGAGAAGTGGGTGCGCTTCACCGCCCACCTCGGCACGCTGGTACAGCGCCGGCACCGT
TGCGAAGCGCCGATGGTCGCGCGCAAGACCATTCGCAGCTCCAACGGCCAGGCCCAGACCCGCTACGTGATC
CGCACCACCCTGGCGCTGGGCGATCGCATGTGGCCGGTGGAGTTCACCCTGGCCTGCCGCAAGTCCATGCGC
TATCGCGTGCTGCTCGGCTCCAAGGCGCTGATCGCCGGGCAACTGGTGGTCAACCCGGCCCTGGCCTACGTC
CAGGATCGTCCCGAGTCGCCGGCCGCCCTGCCCGCGGCGACGGGCATCAACCTGCTCGACGGGAGTCCGGTT
TGA
Translation:
MVGLRAKIDTGASTSSLHASDIVPFERDGEKWVRFTAHLGTLVQRRHRCEAPMVARKTIRSSNGQAQTRYVI
RTTLALGDRMWPVEFTLACRKSMRYRVLLGSKALIAGQLVVNPALAYVQDRPESPAALPAATGINLLDGSPV
*
AnnotationID:4668GeneID:4662
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5196
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE07899.1| (BX569692) possible ribosomal protein S6 modification protein
           [Synechococcus sp. WH 8102]
          Length = 466

 Score =  103 bits (256), Expect = 4e-22
 Identities = 51/116 (43%), Positives = 84/116 (72%), Gaps = 8/116 (6%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:9325
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26466
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34878
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4662_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4662

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7030 PA5196_tr translation of PA5196 144 97.91 99.30 0 718.0
185939 gb|AAG08581.1|AE004932_8 (AE004932) hypothetical protein PA5196 [Pseudomonas aeruginosa PAO1] 144 97.91 99.30 0 718.0
185940 gb|AAO53781.1| (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 167 61.67 70.05 32 533.0
185941 gb|AAN65881.1|AE016216_2 (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440] 213 48.35 54.92 76 529.0
185942 emb|CAE07899.1| (BX569692) possible ribosomal protein S6 modification protein [Synechococcus sp. WH 8102] 471 12.95 21.01 332 263.0
GC ORFID: 47664How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5196Glimmer Score:
Start: 5384473Stop: 5384907
Length: 435
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5196 translation of PA5196Homolog Bit Score 281.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3105 (ORF: BLASTX 246.0), t_PA5196 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCGGGCTGCGCGCGAAGATCGACACCGGCGCCAGCACCTCCAGCCTACATGCCTCGGACATCGTTCCC
TTCGAGCGCGACGGCGAGAAGTGGGTGCGCTTCACCGCCCACCTCGGCACGCTGGTACAGCGCCGGCACCGT
TGCGAAGCGCCGATGGTCGCGCGCAAGACCATTCGCAGCTCCAACGGCCAGGCCCAGACCCGCTACGTGATC
CGCACCACCCTGGCGCTGGGCGATCGCATGTGGCCGGTGGAGTTCACCCTGGCCTGCCGCAAGTCCATGCGC
TATCGCGTGCTGCTCGGCTCCAAGGCGCTGATCGCCGGGCAACTGGTGGTCAACCCGGCCCTGGCCTACGTC
CAGGATCGTCCCGAGTCGCCGGCCGCCCTGCCCGCGGCGACGGGCATCAACCTGCTCGACGGGAGTCCGGTT
TGA