ViewGene
Locus Name:
GeneID:
Location:

GeneID:4661
TrivialName: PA14_61000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61000
PAO1 Ortholog Locus:PA4610
Sequence Length:435
Protein Length:144
Start: 5441213
Stop: 5441647
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07998.1|AE004875_4 (AE004875) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/144 (98%), Positives = 142/144 (98%)
Sequence:
ATGCGCACACTGCTGTTCCTGCACCTGCTGGGTGCCGCGATCTGGGTCGGCGGCCACCTGGTCCTGGCCCTC
GGCATCCTCCCCGGCGCCCTGCGCCGCCGCGATCCCCAGGCGATCCGCGCCTTCGAGCAGGTCTACGAGCGG
ATCGGCATCCCCGCCCTGCTGCTGCAGGTGGTCAGCGGCCTGTGGCTGGCCAGCCTGTGGCTGCCGTTCCAC
CACTGGTTCGGCGCCACGCCGGTGGCCCGTGCCCTGCAGCTCAAGCTGCTGCTCCTGGCGGCGACCGCCGCC
CTGGGCGTGCATGCGCGCCTGCGCCTGATCCCGAACCTGGACGCCGAGAGCCTGCCGAAGCTGGGCTGGCAC
ATCGCCGCGATCACCCTGGTGGGCCTGTGTTTCGTCGCGGTCGGACAGAGTTTCCGTTTCGGCGGCGCCTTC
TGA
Translation:
MRTLLFLHLLGAAIWVGGHLVLALGILPGALRRRDPQAIRAFEQVYERIGIPALLLQVVSGLWLASLWLPFH
HWFGATPVARALQLKLLLLAATAALGVHARLRLIPNLDAESLPKLGWHIAAITLVGLCFVAVGQSFRFGGAF
*
AnnotationID:4667GeneID:4661
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4610
Cell Localization Confidence Code:4
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9323




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26464




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31614




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4661_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4661
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7029
                           PA4610_tr
                           translation of PA4610
                           144
                           98.61
                           98.61
                           0
                           718.0
     

     
     
185937
                           gb|AAG07998.1|AE004875_4
                           (AE004875) hypothetical protein PA4610 [Pseudomonas aeruginosa PAO1]
                           144
                           98.61
                           98.61
                           0
                           718.0
     

     
     
185938
                           emb|CAE21021.1|
                           (BX572097) conserved hypothetical protein [Prochlorococcus marinus str. MIT 9313]
                           153
                           41.17
                           60.78
                           15
                           321.0
     

     






      

          
GC ORFID: 47663How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4610Glimmer Score: 

          
Start: 4704893Stop: 4705327

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4610 translation of PA4610Homolog Bit Score 281.0

          
Other Homologs:  t_PA4610 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCACACTGCTGTTCCTGCACCTGCTGGGTGCCGCGATCTGGGTCGGCGGCCACCTGGTCCTGGCCCTC 
GGCATCCTCCCCGGCGCCCTGCGCCGCCGCGATCCCCAGGCGATCCGCGCCTTCGAGCAGGTCTACGAGCGG 
ATCGGCATCCCCGCCCTGCTGCTGCAGGTGGTCAGCGGCCTGTGGCTGGCCAGCCTGTGGCTGCCGTTCCAC 
CACTGGTTCGGCGCCACGCCGGTGGCCCGTGCCCTGCAGCTCAAGCTGCTGCTCCTGGCGGCGACCGCCGCC 
CTGGGCGTGCATGCGCGCCTGCGCCTGATCCCGAACCTGGACGCCGAGAGCCTGCCGAAGCTGGGCTGGCAC 
ATCGCCGCGATCACCCTGGTGGGCCTGTGTTTCGTCGCGGTCGGACAGAGTTTCCGTTTCGGCGGCGCCTTC 
TGA