ViewGene

Locus Name:
GeneID:
Location:

GeneID:466
TrivialName: PA14_22910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22910
PAO1 Ortholog Locus:PA3194
Sequence Length:1827
Protein Length:608
Start: 1986649
Stop: 1988475
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06582.1|AE004743_5 (AE004743) phosphogluconate dehydratase [Pseudomonas aeruginosa PAO1]
Identities = 608/608 (100%), Positives = 608/608 (100%)
Sequence:
ATGCACCCTCGTGTGCTCGAAGTCACCCGCCGCATCCAGGCCCGTAGCGCGGCCACTCGCCAACGCTACCTC
GAGATGGTCAGGGCGGCGGCCAGCAAGGGGCCGCACCGCGGCACCCTGCCGTGCGGCAACCTCGCCCACGGG
GTCGCGGCCTGTGGCGAAAGCGACAAGCAGACCCTGCGGCTGATGAACCAGGCCAACGTGGCCATCGTTTCC
GCCTACAACGACATGCTCTCGGCGCACCAGCCGTTCGAGCGCTTTCCGGGGCTTATAAAACAGGCGCTGCAC
GAGATCGGTTCGGTCGGCCAGTTCGCCGGCGGCGTGCCGGCCATGTGCGACGGGGTGACCCAGGGCGAGCCG
GGCATGGAACTGTCGCTGGCCAGCCGCGACGTGATCGCCATGTCCACCGCCATCGCGCTGTCTCACAACATG
TTCGATGCGGCGCTGTGCCTGGGCGTCTGCGACAAGATCGTGCCGGGCCTGCTGATCGGCTCGCTGCGCTTC
GGCCACCTGCCCACCGTGTTCGTCCCGGCCGGGCCGATGCCGACCGGCATCTCCAACAAGGAAAAGGCCGCG
GTGCGCCAACTGTTCGCCGAGGGCAAGGCCACTCGCGAAGAGCTGCTGGCCTCGGAAATGGCCTCCTACCAT
GCACCCGGCACCTGCACCTTCTATGGCACCGCCAATACCAACCAGTTGCTGGTGGAGGTGATGGGCCTGCAC
TTGCCCGGTGCCTCCTTCGTCAACCCGAACACCCCGCTGCGCGACGAACTCACCCGCGAAGCGGCGCGCCAG
GCCAGCCGGCTGACCCCTGAGAACGGCAACTACGTGCCGATGGCGGAGATCGTCGACGAGAAGGCCATCGTC
AACTCGGTGGTGGCGCTGCTCGCCACCGGCGGCTCGACCAACCATACCCTGCACCTGCTGGCGATCGCCCAG
GCGGCGGGCATCCAGTTGACCTGGCAGGACATGTCCGAGCTGTCCCATGTGGTGCCGACCCTGGCGCGCATC
TATCCGAACGGCCAGGCCGACATCAACCACTTCCAGGCGGCCGGCGGCATGTCCTTCCTGATCCGCCAGCTG
CTCGACGGCGGGCTGCTTCACGAGGACGTACAGACCGTCGCCGGCCCCGGCCTGCGCCGCTACACCCGCGAG
CCGTTCCTCGAGGATGGCCGGCTGGTCTGGCGCGAAGGGCCGGAACGGAGTCTCGACGAAGCCATCCTGCGT
CCGCTGGACAAGCCGTTCTCCGCCGAAGGCGGCTTGCGCCTGATGGAGGGCAACCTCGGTCGCGGCGTGATG
AAGGTCTCGGCGGTGGCGCCGGAACACCAGGTGGTCGAGGCGCCGGTACGGATCTTCCACGACCAGGCCAGC
CTGGCCGCGGCCTTCAAGGCCGGCGAGCTGGAGCGCGACCTGGTCGCCGTGGTGCGTTTCCAGGGCCCGCGG
GCGAACGGCATGCCGGAGCTGCACAAGCTCACGCCGTTCCTCGGGGTCCTGCAGGATCGTGGCTTCAAGGTG
GCGCTGGTCACCGACGGGCGCATGTCCGGGGCGTCGGGCAAGGTGCCCGCGGCCATCCATGTGAGTCCGGAA
GCCATCGCCGGCGGTCCCCTGGCGCGCCTGCGCGACGGCGACCGGGTACGGGTGGATGGGGTGAACGGCGAG
TTGCGGGTGCTGGTCGACGACGCCGAATGGCAGGCGCGCAGCCTGGAGCCGGCGCCGCAGGACGGCAATCTC
GGTTGCGGCCGCGAGCTGTTCGCCTTCATGCGCAACGCCATGAGCAGCGCGGAAGAGGGCGCCTGCAGCTTT
ACCGAGAGCCTCAACGGCTGGCGCTGA
Translation:
MHPRVLEVTRRIQARSAATRQRYLEMVRAAASKGPHRGTLPCGNLAHGVAACGESDKQTLRLMNQANVAIVS
AYNDMLSAHQPFERFPGLIKQALHEIGSVGQFAGGVPAMCDGVTQGEPGMELSLASRDVIAMSTAIALSHNM
FDAALCLGVCDKIVPGLLIGSLRFGHLPTVFVPAGPMPTGISNKEKAAVRQLFAEGKATREELLASEMASYH
APGTCTFYGTANTNQLLVEVMGLHLPGASFVNPNTPLRDELTREAARQASRLTPENGNYVPMAEIVDEKAIV
NSVVALLATGGSTNHTLHLLAIAQAAGIQLTWQDMSELSHVVPTLARIYPNGQADINHFQAAGGMSFLIRQL
LDGGLLHEDVQTVAGPGLRRYTREPFLEDGRLVWREGPERSLDEAILRPLDKPFSAEGGLRLMEGNLGRGVM
KVSAVAPEHQVVEAPVRIFHDQASLAAAFKAGELERDLVAVVRFQGPRANGMPELHKLTPFLGVLQDRGFKV
ALVTDGRMSGASGKVPAAIHVSPEAIAGGPLARLRDGDRVRVDGVNGELRVLVDDAEWQARSLEPAPQDGNL
GCGRELFAFMRNAMSSAEEGACSFTESLNGWR*
AnnotationID:475GeneID:466
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:24
Gene Name:edd
Confidence Code:1
GeneProduct:6-phosphogluconate dehydratase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:dihydroxyacid dehydratase
Functional Category Confidence Code:5
COGs:pfam00920,COG0129
Secondary Functional Category(ies):carbon compond metabolims; central intermediary metbolism
EC Number:4.2.1.12
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66635.1|AE016291_4 (AE016777) 6-phosphogluconate dehydratase [Pseudomonas putida
           KT2440]
          Length = 608

 Score =  963 bits (2490), Expect = 0.0
 Identities = 471/604 (77%), Positives = 536/604 (88%)

>gb|AAM85223.1|AE013768_12 (AE013768) 6-phosphogluconate dehydratase [Yersinia pestis KIM]
          Length = 625

 Score =  782 bits (2019), Expect = 0.0
 Identities = 387/619 (62%), Positives = 477/619 (77%), Gaps = 21/619 (3%)

>emb|CAA45221.1| (X63694) phosphogluconate dehydratase [Escherichia coli]
          Length = 603

 Score =  756 bits (1952), Expect = 0.0
 Identities = 374/602 (62%), Positives = 462/602 (76%), Gaps = 1/602 (0%)

Structural Features:
pfam00920, ILVD_EDD, Dehydratase family.
CD-Length = 531 residues, 100.0% aligned
Score =  606 bits (1565), Expect = 2e-174
Identities = 229/550 (41%), Positives = 312/550 (56%), Gaps = 33/550 (6%)

COG0129, IlvD, Dihydroxyacid dehydratase/phosphogluconate dehydratase 
[Amino acid transport and metabolism / 
Carbohydrate transport and metabolism]
CD-Length = 575 residues,  99.3% aligned
Score =  635 bits (1640), Expect = 0.0
Identities = 238/609 (39%), Positives = 324/609 (53%), Gaps = 50/609 (8%)

Genomic Context:
Comment:
ReferenceID:935
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18077
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32349
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:466_cdd.html
URL:
ReferenceID:33974
Author/Investigator(s): Cuskey SM, Wolff JA, Phibbs PV Jr, Olsen RH.
Title: Cloning of genes specifying carbohydrate catabolism in Pseudomonas aeruginosa and Pseudomonas putida.
PubMed: 3922954
MedLine:
Source:
J Bacteriol. 1985 Jun;162(3):865-71.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3922954
ReferenceID:33975
Author/Investigator(s): Temple L, Cuskey SM, Perkins RE, Bass RC, Morales NM, Christie GE, Olsen RH, Phibbs PV Jr.
Title: Analysis of cloned structural and regulatory genes for carbohydrate utilization in Pseudomonas aeruginosa PAO.
PubMed: 2121713
MedLine:
Source:
J Bacteriol. 1990 Nov;172(11):6396-402.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2121713
Homologs By Global Alignment
Gene ID:466

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
802 PA3194_tr translation of PA3194 608 99.99 99.99 0 3122.0
34195 gb|AAG06582.1|AE004743_5 (AE004743) phosphogluconate dehydratase [Pseudomonas aeruginosa PAO1] 608 99.99 99.99 0 3122.0
34196 gb|AAA03487.1| (M74256) 6-phosphogluconate dehydratase [Pseudomonas aeruginosa] 612 95.58 96.24 6 2950.0
34197 gb|AAN66635.1|AE016291_4 (AE016777) 6-phosphogluconate dehydratase [Pseudomonas putida KT2440] 608 77.46 88.32 0 2488.0
34198 gb|AAO54812.1| (AE016860) 6-phosphogluconate dehydratase [Pseudomonas syringae pv. tomato str. DC3000] 610 76.55 86.88 4 2418.0
GC ORFID: 43468How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3194Glimmer Score:
Start: 2967282Stop: 2965456
Length: 1827
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3194 translation of PA3194Homolog Bit Score 1207.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4414 (ORF: BLASTX 938.0), t_PA3194 (ORF: GLIMMER)
GC ORF Sequence
ATGCACCCTCGTGTGCTCGAAGTCACCCGCCGCATCCAGGCCCGTAGCGCGGCCACTCGCCAACGCTACCTC
GAGATGGTCAGGGCGGCGGCCAGCAAGGGGCCGCACCGCGGCACCCTGCCGTGCGGCAACCTCGCCCACGGG
GTCGCGGCCTGTGGCGAAAGCGACAAGCAGACCCTGCGGCTGATGAACCAGGCCAACGTGGCCATCGTTTCC
GCCTACAACGACATGCTCTCGGCGCACCAGCCGTTCGAGCGCTTTCCGGGGCTTATAAAACAGGCGCTGCAC
GAGATCGGTTCGGTCGGCCAGTTCGCCGGCGGCGTGCCGGCCATGTGCGACGGGGTGACCCAGGGCGAGCCG
GGCATGGAACTGTCGCTGGCCAGCCGCGACGTGATCGCCATGTCCACCGCCATCGCGCTGTCTCACAACATG
TTCGATGCGGCGCTGTGCCTGGGCGTCTGCGACAAGATCGTGCCGGGCCTGCTGATCGGCTCGCTGCGCTTC
GGCCACCTGCCCACCGTGTTCGTCCCGGCCGGGCCGATGCCGACCGGCATCTCCAACAAGGAAAAGGCCGCG
GTGCGCCAACTGTTCGCCGAGGGCAAGGCCACTCGCGAAGAGCTGCTGGCCTCGGAAATGGCCTCCTACCAT
GCACCCGGCACCTGCACCTTCTATGGCACCGCCAATACCAACCAGTTGCTGGTGGAGGTGATGGGCCTGCAC
TTGCCCGGTGCCTCCTTCGTCAACCCGAACACCCCGCTGCGCGACGAACTCACCCGCGAAGCGGCGCGCCAG
GCCAGCCGGCTGACCCCTGAGAACGGCAACTACGTGCCGATGGCGGAGATCGTCGACGAGAAGGCCATCGTC
AACTCGGTGGTGGCGCTGCTCGCCACCGGCGGCTCGACCAACCATACCCTGCACCTGCTGGCGATCGCCCAG
GCGGCGGGCATCCAGTTGACCTGGCAGGACATGTCCGAGCTGTCCCATGTGGTGCCGACCCTGGCGCGCATC
TATCCGAACGGCCAGGCCGACATCAACCACTTCCAGGCGGCCGGCGGCATGTCCTTCCTGATCCGCCAGCTG
CTCGACGGCGGGCTGCTTCACGAGGACGTACAGACCGTCGCCGGCCCCGGCCTGCGCCGCTACACCCGCGAG
CCGTTCCTCGAGGATGGCCGGCTGGTCTGGCGCGAAGGGCCGGAACGGAGTCTCGACGAAGCCATCCTGCGT
CCGCTGGACAAGCCGTTCTCCGCCGAAGGCGGCTTGCGCCTGATGGAGGGCAACCTCGGTCGCGGCGTGATG
AAGGTCTCGGCGGTGGCGCCGGAACACCAGGTGGTCGAGGCGCCGGTACGGATCTTCCACGACCAGGCCAGC
CTGGCCGCGGCCTTCAAGGCCGGCGAGCTGGAGCGCGACCTGGTCGCCGTGGTGCGTTTCCAGGGCCCGCGG
GCGAACGGCATGCCGGAGCTGCACAAGCTCACGCCGTTCCTCGGGGTCCTGCAGGATCGTGGCTTCAAGGTG
GCGCTGGTCACCGACGGGCGCATGTCCGGGGCGTCGGGCAAGGTGCCCGCGGCCATCCATGTGAGTCCGGAA
GCCATCGCCGGCGGTCCCCTGGCGCGCCTGCGCGACGGCGACCGGGTACGGGTGGATGGGGTGAACGGCGAG
TTGCGGGTGCTGGTCGACGACGCCGAATGGCAGGCGCGCAGCCTGGAGCCGGCGCCGCAGGACGGCAATCTC
GGTTGCGGCCGCGAGCTGTTCGCCTTCATGCGCAACGCCATGAGCAGCGCGGAAGAGGGCGCCTGCAGCTTT
ACCGAGAGCCTCAACGGCTGGCGCTGA