ViewGene
Locus Name:
GeneID:
Location:

GeneID:4658
TrivialName: PA14_26620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26620
PAO1 Ortholog Locus:PA2894
Sequence Length:423
Protein Length:140
Start: 2319728
Stop: 2320150
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06282.1|AE004715_8 (AE004715) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/140 (99%), Positives = 139/140 (99%)
Sequence:
GTGCCTGCCGCGCCGAAAACAGCTTCGAAGAAGGTCGCGCCAGCCGCGGAGCAGGTTGCCGAACCCAAGCCG
CCGGCCAAGCCGAAGCCTGCGGCTACGCCGCCGAAGCCGGCCAGCAGGCCGGTCGCCAAGGACAAGCCGGCG
CCGGCGAAGCGCGCTTCCACTGCCCGTCTCGACCCCGAGGTGCGCAAGCCGCTGCCGAGCGCCAAGCTGGAC
CTGCGCCTGCCGAAGGAACTGGTGCAGAAGATGGCGCCGCCCGGCACGGAAGAGACCCATAAGCCCAAGCCG
CTGTTGCCGCCGATGTTCGAGGAAAAGGACGACAGCGACTTCCGCCTCAACGGCCAGTTGCTCTATCGCGAC
CGCGAACTGGGCGTGTCGCGGCCCCTGGAAGGGGCCGAGTTGCAGTTCGAATTCCGCCAGTAG
Translation:
MPAAPKTASKKVAPAAEQVAEPKPPAKPKPAATPPKPASRPVAKDKPAPAKRASTARLDPEVRKPLPSAKLD
LRLPKELVQKMAPPGTEETHKPKPLLPPMFEEKDDSDFRLNGQLLYRDRELGVSRPLEGAELQFEFRQ*
AnnotationID:4664GeneID:4658
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 11:11:10
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2894
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15146




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26458




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36141




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4658_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4658
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7026
                           PA2894_tr
                           translation of PA2894
                           140
                           99.28
                           99.28
                           0
                           720.0
     

     
     
185934
                           gb|AAG06282.1|AE004715_8
                           (AE004715) hypothetical protein PA2894 [Pseudomonas aeruginosa PAO1]
                           140
                           98.57
                           99.28
                           0
                           717.0
     

     






      

          
GC ORFID: 47660How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2894Glimmer Score: 

          
Start: 2634198Stop: 2633776

          
Length: 423


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2894 translation of PA2894Homolog Bit Score 281.0

          
Other Homologs:  t_PA2894 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCTGCCGCGCCGAAAACAGCTTCGAAGAAGGTCGCGCCAGCCGCGGAGCAGGTTGCCGAACCCAAGCCG 
CCGGCCAAGCCGAAGCCTGCGGCTACGCCGCCGAAGCCGGCCAGCAGGCCGGTCGCCAAGGACAAGCCGGCG 
CCGGCGAAGCGCGCTTCCACTGCCCGTCTCGACCCCGAGGTGCGCAAGCCGCTGCCGAGCGCCAAGCTGGAC 
CTGCGCCTGCCGAAGGAACTGGTGCAGAAGATGGCGCCGCCCGGCACGGAAGAGACCCATAAGCCCAAGCCG 
CTGTTGCCGCCGATGTTCGAGGAAAAGGACGACAGCGACTTCCGCCTCAACGGCCAGTTGCTCTATCGCGAC 
CGCGAACTGGGCGTGTCGCGGCCCCTGGAAGGGGCCGAGTTGCAGTTCGAATTCCGCCAGTAG