ViewGene
Locus Name:
GeneID:
Location:

GeneID:4656
TrivialName: PA14_71340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71340
PAO1 Ortholog Locus:PA5404
Sequence Length:405
Protein Length:134
Start: 6356020
Stop: 6356424
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08789.1|AE004953_3 (AE004953) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/134 (99%), Positives = 133/134 (99%)
Sequence:
ATGAACAGACACCTGAACCTCTCGGGCGTTGCGCTCGCGCTCGCCCTGATCTCGGGCTGCGGCCCCTCCGTC
CGCTACCAGTACGTGATGCCGCCAAGCGAGGCGGGACGCACCTGCGTCGCCCAGTGCCGCACGCAACAGAGC
CAGTGCGAAAGCCTCGCGCGCCTGGAATGGCAGAACGAAAACCGCCTGCGCGAAGCGGAACGGCGCAGCTAC
CACTATTGCAGCCAGGGCAAGAGCAAGAAGCAGGCGCGCAAGGAATGCCTGGCGCCAGGCTATTCCTCCTCG
TTCGGCTACAACAGCTTCGGCGGCTCCGGCAACTTCAACTGCAGTTCCGACTACGACCGCTGCTTCACCGAC
ATCTGCGGCGGCACCATCCGCCGCATCGTCGAGCAACCTCAATGA
Translation:
MNRHLNLSGVALALALISGCGPSVRYQYVMPPSEAGRTCVAQCRTQQSQCESLARLEWQNENRLREAERRSY
HYCSQGKSKKQARKECLAPGYSSSFGYNSFGGSGNFNCSSDYDRCFTDICGGTIRRIVEQPQ*
AnnotationID:4662GeneID:4656
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 11:11:42
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5404
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9313




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26454




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4656
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7023
                           PA5404_tr
                           translation of PA5404
                           134
                           99.25
                           99.25
                           0
                           721.0
     

     
     
185931
                           gb|AAG08789.1|AE004953_3
                           (AE004953) hypothetical protein PA5404 [Pseudomonas aeruginosa PAO1]
                           134
                           99.25
                           99.25
                           0
                           721.0
     

     
     
7024
                           PA2761_tr
                           translation of PA2761
                           151
                           35.76
                           51.65
                           30
                           264.0
     

     
     
185932
                           gb|AAG06149.1|AE004704_3
                           (AE004704) hypothetical protein PA2761 [Pseudomonas aeruginosa PAO1]
                           151
                           35.76
                           51.65
                           30
                           264.0
     

     






      

          
GC ORFID: 47658How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5404Glimmer Score: 

          
Start: 5619709Stop: 5620113

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5404 translation of PA5404Homolog Bit Score 282.0

          
Other Homologs:  t_PA2761 (ORF: BLASTX 102.0), t_PA5404 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAGACACCTGAACCTCTCGGGCGTTGCGCTCGCGCTCGCCCTGATCTCGGGCTGCGGCCCCTCCGTC 
CGCTACCAGTACGTGATGCCGCCAAGCGAGGCGGGACGCACCTGCGTCGCCCAGTGCCGCACGCAACAGAGC 
CAGTGCGAAAGCCTCGCGCGCCTGGAATGGCAGAACGAAAACCGCCTGCGCGAAGCGGAACGGCGCAGCTAC 
CACTATTGCAGCCAGGGCAAGAGCAAGAAGCAGGCGCGCAAGGAATGCCTGGCGCCAGGCTATTCCTCCTCG 
TTCGGCTACAACAGCTTCGGCGGCTCCGGCAACTTCAACTGCAGTTCCGACTACGACCGCTGCTTCACCGAC 
ATCTGCGGCGGCACCATCCGCCGCATCGTCGAGCAACCTCAATGA