ViewGene
Locus Name:
GeneID:
Location:

GeneID:4655
TrivialName: PA14_67100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67100
PAO1 Ortholog Locus:PA5079
Sequence Length:438
Protein Length:145
Start: 5990703
Stop: 5990266
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08464.1|AE004921_1 (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 144/145 (99%)
Sequence:
ATGAAGGCATTGCTGCAGCGCGTCGGCGCGGCGCGGGTGGAGGTTGGCGGCGAAATCGTCGGCTCCATCGAT
CGCGGCCTGCTGGTGCTGGTCGGGGTCGAGCCCGAGGATGGCGAGCGTTGCGCGGCGAAGATGCTGCACAAG
CTGCTCAACTACAGGGTGTTCGGCGACGACGAGGGCAAGATGAACCGGTCCTTGCTGGACGTGCAGGGCGGC
TTGCTGCTGGTCTCGCAATTCACCCTGGCGGCGAACACCCGCAGCGGACTGCGTCCGAGCTTCTCCAGCGCG
GCGCCGCCGGCGCAAGGAGAGACGGTGTTCGAGCACCTGGTGAAACTGGCGCGGGAGGCCTATCCGCAGGTG
GCGACCGGGCGTTTCGGCGCCGACATGCAGGTGCACCTGGTCAACGACGGGCCGGTGACCTTCCTGCTGGAG
AGTTGA
Translation:
MKALLQRVGAARVEVGGEIVGSIDRGLLVLVGVEPEDGERCAAKMLHKLLNYRVFGDDEGKMNRSLLDVQGG
LLLVSQFTLAANTRSGLRPSFSSAAPPAQGETVFEHLVKLAREAYPQVATGRFGADMQVHLVNDGPVTFLLE
S*
AnnotationID:4661GeneID:4655
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 06:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative D-tyrosyl-tRNA(Tyr) deacylase
Cell Localization:()
Synonyms:dtD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00563
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70592.1|AE016702_1 (AE016792) D-tyrosyl-tRNA(Tyr) deacylase [Pseudomonas putida
           KT2440]
          Length = 145

 Score =  205 bits (521), Expect = 7e-53
 Identities = 102/144 (70%), Positives = 122/144 (84%)

>gb|AAO58589.1| (AE016874) D-tyrosyl-tRNA(Tyr) deacylase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 145

 Score =  196 bits (499), Expect = 2e-50
 Identities = 99/145 (68%), Positives = 119/145 (82%)

>gb|AAN83263.1|AE016770_63 (AE016770) D-tyrosyl-tRNA(Tyr) deacylase [Escherichia coli CFT073]
          Length = 145

 Score =  147 bits (370), Expect = 2e-35
 Identities = 75/144 (52%), Positives = 99/144 (68%)








 
Structural Features:
cd00563, Dtyr_deacylase, D-Tyrosyl-tRNAtyr deacylases
CD-Length = 145 residues, 100.0% aligned
Score =  197 bits (503), Expect = 4e-52
Identities = 83/145 (57%), Positives = 107/145 (73%)






   
Genomic Context:






   
Comment:
other posssible gene name: yihZ


















    ReferenceID:9311




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26452




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38066




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4655_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4655
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7022
                           PA5079_tr
                           translation of PA5079
                           145
                           99.31
                           99.31
                           0
                           722.0
     

     
     
185857
                           gb|AAG08464.1|AE004921_1
                           (AE004921) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           145
                           99.31
                           99.31
                           0
                           722.0
     

     
     
185858
                           gb|AAN70592.1|AE016702_1
                           (AE016792) D-tyrosyl-tRNA(Tyr) deacylase [Pseudomonas putida KT2440]
                           145
                           70.34
                           84.13
                           0
                           519.0
     

     
     
185859
                           gb|AAO58589.1|
                           (AE016874) D-tyrosyl-tRNA(Tyr) deacylase [Pseudomonas syringae pv. tomato str. DC3000]
                           145
                           68.27
                           82.06
                           0
                           499.0
     

     
     
185860
                           gb|AAM38631.1|
                           (AE012027) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           146
                           60.27
                           69.17
                           1
                           408.0
     

     






      

          
GC ORFID: 47657How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5079Glimmer Score: 

          
Start: 5254388Stop: 5253951

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5079 translation of PA5079Homolog Bit Score 282.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3272 (ORF: BLASTX 197.0), t_PA5079 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGGCATTGCTGCAGCGCGTCGGCGCGGCGCGGGTGGAGGTTGGCGGCGAAATCGTCGGCTCCATCGAT 
CGCGGCCTGCTGGTGCTGGTCGGGGTCGAGCCCGAGGATGGCGAGCGTTGCGCGGCGAAGATGCTGCACAAG 
CTGCTCAACTACAGGGTGTTCGGCGACGACGAGGGCAAGATGAACCGGTCCTTGCTGGACGTGCAGGGCGGC 
TTGCTGCTGGTCTCGCAATTCACCCTGGCGGCGAACACCCGCAGCGGACTGCGTCCGAGCTTCTCCAGCGCG 
GCGCCGCCGGCGCAAGGAGAGACGGTGTTCGAGCACCTGGTGAAACTGGCGCGGGAGGCCTATCCGCAGGTG 
GCGACCGGGCGTTTCGGCGCCGACATGCAGGTGCACCTGGTCAACGACGGGCCGGTGACCTTCCTGCTGGAG 
AGTTGA