ViewGene
Locus Name:
GeneID:
Location:

GeneID:4654
TrivialName: PA14_65150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65150
PAO1 Ortholog Locus:PA4932
Sequence Length:447
Protein Length:148
Start: 5807507
Stop: 5807061
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08317.1|AE004906_5 (AE004906) 50S ribosomal protein L9 [Pseudomonas aeruginosa PAO1]
Identities = 148/148 (100%), Positives = 148/148 (100%)
Sequence:
ATGGAAGTCATCCTGCTGGAAAAAGTCGCCAACCTGGGCAACCTGGGCGACAAGGTGAACATCAAGGGCGGT
TACGCCCGTAACTTCCTGCTGCCGCAGGGCAAGGCCACCGTCGCCACCGCCGAGAACGTCGCTGCGTTCGAA
GCCCGCCGCGCCGAGCTGGAAAAGGCTGCCGCCGAGAAGAAGGCCGCTGCCGAAGCCCGTGCTGCCCAGCTC
TCCGAGCTGGTGGTAACCCTCGGCGCCCACGCTGGCGACGAAGGCAAGCTGTTCGGTTCGATCGGCACCCGC
GACATCGCCGAAGCCGTTTCCGCTGCCGGTTACCCGCTGGAAAAAGCCGAAGTTCGCCTGCCCAACGGCGCG
CTGCGCAACACCGGTGAGTTCGACGTCGCCGTGCACCTGCACACCGACGTGGAAACCACTCTGAAGCTGATC
ATCGTCGCTGAGTAA
Translation:
MEVILLEKVANLGNLGDKVNIKGGYARNFLLPQGKATVATAENVAAFEARRAELEKAAAEKKAAAEARAAQL
SELVVTLGAHAGDEGKLFGSIGTRDIAEAVSAAGYPLEKAEVRLPNGALRNTGEFDVAVHLHTDVETTLKLI
IVAE*
AnnotationID:4660GeneID:4654
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 12:12:12
Gene Name:rplI
Confidence Code:2
GeneProduct:50S ribosomal protein L9
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0359
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58358.1| (AE016873) ribosomal protein L9 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 148

 Score =  218 bits (555), Expect = 8e-57
 Identities = 108/147 (73%), Positives = 129/147 (87%)

>gb|AAN70443.1|AE016685_8 (AE016792) ribosomal protein L9 [Pseudomonas putida KT2440]
          Length = 148

 Score =  216 bits (549), Expect = 4e-56
 Identities = 108/147 (73%), Positives = 129/147 (87%)

>gb|AAO09839.1|AE016801_158 (AE016801) Ribosomal protein L9 [Vibrio vulnificus CMCP6]
          Length = 149

 Score =  186 bits (473), Expect = 3e-47
 Identities = 95/149 (63%), Positives = 121/149 (81%), Gaps = 1/149 (0%)






 
Structural Features:
COG0359, RplI, Ribosomal protein L9 
[Translation, ribosomal structure and biogenesis]
CD-Length = 148 residues,  99.3% aligned
Score =  161 bits (409), Expect = 3e-41
Identities = 78/148 (52%), Positives = 104/148 (70%), Gaps = 1/148 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9309




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26450




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35120




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4654_cdd.html


    		




 
URL:

















    ReferenceID:35916




  
Author/Investigator(s):
        Schnier J, Kitakawa M, Isono K.





  
Title:
        The nucleotide sequence of an Escherichia coli chromosomal region containing the genes for ribosomal proteins S6, S18, L9 and an open reading frame.




  
PubMed:
        3528756


MedLine:
        




    
Source:
Mol Gen Genet. 1986 Jul;204(1):126-32.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3528756

















    ReferenceID:35919




  
Author/Investigator(s):
        Malakhov MP, Wada H, Los DA, Sakamoto T, Murata N.





  
Title:
        Structure of a cyanobacterial gene encoding the 50S ribosomal protein L9.




  
PubMed:
        8467083


MedLine:
        




    
Source:
Plant Mol Biol. 1993 Mar;21(5):913-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8467083









           
Homologs By Global Alignment 

           

       



     
Gene ID:4654
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7021
                           PA4932_tr
                           translation of PA4932
                           148
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185805
                           gb|AAG08317.1|AE004906_5
                           (AE004906) 50S ribosomal protein L9 [Pseudomonas aeruginosa PAO1]
                           148
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185806
                           gb|AAO58358.1|
                           (AE016873) ribosomal protein L9 [Pseudomonas syringae pv. tomato str. DC3000]
                           148
                           72.97
                           87.16
                           0
                           554.0
     

     
     
185807
                           gb|AAN70443.1|AE016685_8
                           (AE016792) ribosomal protein L9 [Pseudomonas putida KT2440]
                           148
                           72.97
                           87.16
                           0
                           548.0
     

     
     
185812
                           emb|CAC92765.1|
                           (AJ414157) 50S ribosomal protein L9 [Yersinia pestis CO92]
                           150
                           64.00
                           79.33
                           2
                           469.0
     

     






      

          
GC ORFID: 47656How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4932Glimmer Score: 

          
Start: 5071188Stop: 5070742

          
Length: 447


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4932 translation of PA4932Homolog Bit Score 282.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3442 (ORF: BLASTX 218.0), t_PA4932 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAGTCATCCTGCTGGAAAAAGTCGCCAACCTGGGCAACCTGGGCGACAAGGTGAACATCAAGGGCGGT 
TACGCCCGTAACTTCCTGCTGCCGCAGGGCAAGGCCACCGTCGCCACCGCCGAGAACGTCGCTGCGTTCGAA 
GCCCGCCGCGCCGAGCTGGAAAAGGCTGCCGCCGAGAAGAAGGCCGCTGCCGAAGCCCGTGCTGCCCAGCTC 
TCCGAGCTGGTGGTAACCCTCGGCGCCCACGCTGGCGACGAAGGCAAGCTGTTCGGTTCGATCGGCACCCGC 
GACATCGCCGAAGCCGTTTCCGCTGCCGGTTACCCGCTGGAAAAAGCCGAAGTTCGCCTGCCCAACGGCGCG 
CTGCGCAACACCGGTGAGTTCGACGTCGCCGTGCACCTGCACACCGACGTGGAAACCACTCTGAAGCTGATC 
ATCGTCGCTGAGTAA