ViewGene
Locus Name:
GeneID:
Location:

GeneID:4653
TrivialName: PA14_28290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28290
PAO1 Ortholog Locus:PA2769
Sequence Length:411
Protein Length:136
Start: 2445715
Stop: 2446125
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06157.1|AE004704_11 (AE004704) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/136 (97%), Positives = 133/136 (97%)
Sequence:
ATGCCGGCACCGCAGGTAGGCGTGGGCGTCCTGATCTTGCGGGACGGCAAGGTGTTGCTGGGGCGCCGCAAG
GGCAGCCACGGCGCTGGCTGCTGGTCGGCGCCCGGCGGCCATCTCGAGTTCGGCGAGGCGGTGGAGGACTGC
GCCCTGCGCGAAGCCCTGGAAGAGACCGGCCTGGCGCTGAGCGAACTGCGCCACGGCCCGTTCAGCAATGAC
GTCTTCGAGGGGCGCCACTACCTCACCGCGTTCATCCTGGCCGGTTGCGCGGAGGATGCCGAGGCGCGCCTC
ATGGAGCCGGGCAAGTGCGACGGCTGGGCCTGGTTCGATTGGGCCGATCTGCCGGAGCCGCTGTTCGCGCCC
CTGGCGAGCCTGCGCCGGCGGGGCTATTCGCCCTTCGATCCGGTGCGCTGA
Translation:
MPAPQVGVGVLILRDGKVLLGRRKGSHGAGCWSAPGGHLEFGEAVEDCALREALEETGLALSELRHGPFSND
VFEGRHYLTAFILAGCAEDAEARLMEPGKCDGWAWFDWADLPEPLFAPLASLRRRGYSPFDPVR*
AnnotationID:4659GeneID:4653
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 21:09:11
Gene Name:
Confidence Code:3
GeneProduct:putative pyrophosphatase
Cell Localization:()
Synonyms:PA2769
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1051
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1051, ADP-ribose pyrophosphatase 
[Nucleotide transport and metabolism]
CD-Length = 145 residues,  95.2% aligned
Score =  105 bits (264), Expect = 2e-24
Identities = 48/138 (34%), Positives = 64/138 (46%), Gaps = 4/138 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9307




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26448




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36281




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4653_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4653
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7020
                           PA2769_tr
                           translation of PA2769
                           136
                           97.79
                           97.79
                           0
                           721.0
     

     
     
185804
                           gb|AAG06157.1|AE004704_11
                           (AE004704) hypothetical protein PA2769 [Pseudomonas aeruginosa PAO1]
                           136
                           97.79
                           97.79
                           0
                           721.0
     

     






      

          
GC ORFID: 47655How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2769Glimmer Score: 

          
Start: 2508211Stop: 2507801

          
Length: 411


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2769 translation of PA2769Homolog Bit Score 282.0

          
Other Homologs:  t_PA2769 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGCACCGCAGGTAGGCGTGGGCGTCCTGATCTTGCGGGACGGCAAGGTGTTGCTGGGGCGCCGCAAG 
GGCAGCCACGGCGCTGGCTGCTGGTCGGCGCCCGGCGGCCATCTCGAGTTCGGCGAGGCGGTGGAGGACTGC 
GCCCTGCGCGAAGCCCTGGAAGAGACCGGCCTGGCGCTGAGCGAACTGCGCCACGGCCCGTTCAGCAATGAC 
GTCTTCGAGGGGCGCCACTACCTCACCGCGTTCATCCTGGCCGGTTGCGCGGAGGATGCCGAGGCGCGCCTC 
ATGGAGCCGGGCAAGTGCGACGGCTGGGCCTGGTTCGATTGGGCCGATCTGCCGGAGCCGCTGTTCGCGCCC 
CTGGCGAGCCTGCGCCGGCGGGGCTATTCGCCCTTCGATCCGGTGCGCTGA