ViewGene
Locus Name:
GeneID:
Location:

GeneID:4652
TrivialName: PA14_49780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49780
PAO1 Ortholog Locus:PA1129
Sequence Length:408
Protein Length:135
Start: 4428240
Stop: 4427833
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04518.1|AE004543_2 (AE004543) probable fosfomycin resistance protein [Pseudomonas aeruginosa PAO1]
Identities = 135/135 (100%), Positives = 135/135 (100%)
Sequence:
ATGCTTACCGGTCTCAATCACCTGACCCTGGCGGTCGCCGATCTGCCGGCCAGCATCGCCTTCTACCGCGAT
CTTCTCGGCTTTCGCCTGGAAGCGCGCTGGGACCAGGGCGCCTATCTCGAACTGGGTTCGCTGTGGCTGTGC
CTGTCCCGGGAGCCGCAGTACGGCGGGCCGGCCGCGGACTACACGCACTACGCCTTCGGCATCGCCGCCGCG
GACTTCGCCCGCTTCGCCGCGCAGCTGCGCGCGCATGGCGTGCGCGAATGGAAGCAGAACCGCAGCGAGGGC
GATTCGTTCTACTTCCTCGACCCGGACGGCCATCGCCTGGAGGCCCACGTCGGCGACCTGCGCAGCCGGCTC
GCGGCGTGCCGGCAAGCGCCCTATGCGGGAATGCGTTTCGCCGACTAG
Translation:
MLTGLNHLTLAVADLPASIAFYRDLLGFRLEARWDQGAYLELGSLWLCLSREPQYGGPAADYTHYAFGIAAA
DFARFAAQLRAHGVREWKQNRSEGDSFYFLDPDGHRLEAHVGDLRSRLAACRQAPYAGMRFAD*
AnnotationID:4658GeneID:4652
AnnotatorUID: danlee
Modification Date/Time: 2004-09-07 13:01:01
Gene Name:
Confidence Code:3
GeneProduct:probable fosfomycin resistance protein
Cell Localization:()
Synonyms:PA1129
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Related to phage, transposon, or plasmid
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein. Score: 64.0, 7e-12
COG0346, GloA, Lactoylglutathione lyase and related lyases. Score: 54.5, 4e-09






   
Genomic Context:






   
Comment:


















    ReferenceID:9305




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26446




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4652
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7019
                           PA1129_tr
                           translation of PA1129
                           135
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185800
                           gb|AAG04518.1|AE004543_2
                           (AE004543) probable fosfomycin resistance protein [Pseudomonas aeruginosa PAO1]
                           135
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185801
                           gb|AAQ57842.1|
                           (AE016910) fosfomycin resistance protein fofB [Chromobacterium violaceum ATCC 12472]
                           153
                           59.47
                           64.70
                           21
                           451.0
     

     
     
185802
                           gb|AAA98399.1|
                           (M85195) fosfomycin-resistance protein [Serratia marcescens]
                           141
                           58.15
                           68.79
                           6
                           421.0
     

     
     
185803
                           gb|AAP50248.1|
                           (AY294333) ORF1 protein [Pseudomonas aeruginosa]
                           136
                           53.67
                           66.91
                           5
                           386.0
     

     






      

          
GC ORFID: 47654How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1129Glimmer Score: 

          
Start: 525668Stop: 526075

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1129 translation of PA1129Homolog Bit Score 282.0

          
Other Homologs:  t_PA1129 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTACCGGTCTCAATCACCTGACCCTGGCGGTCGCCGATCTGCCGGCCAGCATCGCCTTCTACCGCGAT 
CTTCTCGGCTTTCGCCTGGAAGCGCGCTGGGACCAGGGCGCCTATCTCGAACTGGGTTCGCTGTGGCTGTGC 
CTGTCCCGGGAGCCGCAGTACGGCGGGCCGGCCGCGGACTACACGCACTACGCCTTCGGCATCGCCGCCGCG 
GACTTCGCCCGCTTCGCCGCGCAGCTGCGCGCGCATGGCGTGCGCGAATGGAAGCAGAACCGCAGCGAGGGC 
GATTCGTTCTACTTCCTCGACCCGGACGGCCATCGCCTGGAGGCCCACGTCGGCGACCTGCGCAGCCGGCTC 
GCGGCGTGCCGGCAAGCGCCCTATGCGGGAATGCGTTTCGCCGACTAG