ViewGene
Locus Name:
GeneID:
Location:

GeneID:4651
TrivialName: PA14_52000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52000
PAO1 Ortholog Locus:PA0948
Sequence Length:420
Protein Length:139
Start: 4614957
Stop: 4615376
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04337.1|AE004529_3 (AE004529) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
ATGGCCCGCAAGAACAAACCGCTGCCCGAAGTAGCGTGGCTGCAGCCGCGCCTGGCGCTCAGCCGCGCCATC
AGCCTGGGAAGCTTCGTCGGCCTGGTCCTGCTCATCCTCATTCGCGACCTGATCTACGCGGACGCCCATGGT
GCGGCGAGCTGGGTGCCCTGGCTGGTCCTCGCCTTCAAGCTGCTGCCGCTGCTGGTGGTGGCCCCCGGACTG
CTCATGGGCAGCGCGCGCGGGCATGCCTGGGCCTGCTACGTGGTCAACCTGTATTTCATCCTCGGCGTACTC
GCCGCCTTCGATCCCACGCAGCGCCTGTTCGGCTGGGCCGAAGTGCTACTCAGCGTGACCTTGTTCTGCGCC
GCGCTGCTCTATACGCGCTGGCGATTCCAGTACGACCGAAGGGTCGCCGGGGAACGCTGA
Translation:
MARKNKPLPEVAWLQPRLALSRAISLGSFVGLVLLILIRDLIYADAHGAASWVPWLVLAFKLLPLLVVAPGL
LMGSARGHAWACYVVNLYFILGVLAAFDPTQRLFGWAEVLLSVTLFCAALLYTRWRFQYDRRVAGER*
AnnotationID:4657GeneID:4651
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 14:02:34
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0948
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3308, Predicted membrane protein [Function unknown]
        CD-Length = 131 residues, 100.0% aligned
        Score =  135 bits (341), Expect = 2e-33






   
Genomic Context:






   
Comment:


















    ReferenceID:9303




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26444




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4651
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7018
                           PA0948_tr
                           translation of PA0948
                           139
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185798
                           gb|AAG04337.1|AE004529_3
                           (AE004529) hypothetical protein PA0948 [Pseudomonas aeruginosa PAO1]
                           139
                           99.99
                           99.99
                           0
                           721.0
     

     
     
185799
                           gb|AAN67264.1|AE016353_4
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           140
                           57.85
                           75.71
                           4
                           428.0
     

     






      

          
GC ORFID: 47653How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0948Glimmer Score: 

          
Start: 338950Stop: 338531

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0948 translation of PA0948Homolog Bit Score 282.0

          
Other Homologs:  t_PA0948 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCGCAAGAACAAACCGCTGCCCGAAGTAGCGTGGCTGCAGCCGCGCCTGGCGCTCAGCCGCGCCATC 
AGCCTGGGAAGCTTCGTCGGCCTGGTCCTGCTCATCCTCATTCGCGACCTGATCTACGCGGACGCCCATGGT 
GCGGCGAGCTGGGTGCCCTGGCTGGTCCTCGCCTTCAAGCTGCTGCCGCTGCTGGTGGTGGCCCCCGGACTG 
CTCATGGGCAGCGCGCGCGGGCATGCCTGGGCCTGCTACGTGGTCAACCTGTATTTCATCCTCGGCGTACTC 
GCCGCCTTCGATCCCACGCAGCGCCTGTTCGGCTGGGCCGAAGTGCTACTCAGCGTGACCTTGTTCTGCGCC 
GCGCTGCTCTATACGCGCTGGCGATTCCAGTACGACCGAAGGGTCGCCGGGGAACGCTGA