ViewGene
Locus Name:
GeneID:
Location:

GeneID:4650
TrivialName: PA14_59360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59360
PAO1 Ortholog Locus:
Sequence Length:438
Protein Length:145
Start: 5287648
Stop: 5288085
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84202.1| (AY273869) PilM2 [Pseudomonas aeruginosa]
Identities = 145/145 (100%), Positives = 145/145 (100%)
Sequence:
ATGCCGCTGATGTGGATCGTCCTGGTGCTCGCGCTCATCACCGGGACCTGGCTGAGTGTACAAAGCGACCAC
GCGACCTCGAGCGCCGAACTGGCCGAGGTCGACACCCTGGCCAGGAGCTTGCTGCTCTTCCGGTCCAGTCTG
GCGGAGTACGCACACGCCAACCCCGGTTTCACCGGTTCGCCGGCGGACTCCGCTCTTGGTTTACCGGCCTGG
TTCCGCAAGCCAGCGCGGCTTCAGGGCTACATCGCCGCCGGCACCAGCTACGCCTTCATCGCCTCGCCGCCG
GCGGGGCTGGCGGCGGCCGTGGATGCTGGTACGGAATCCGACCTGGTTGGCGTCAGGCGCAACGGCCAGTTA
GTCACGCGCCGCCTCGGAGCCACTGTCATTGCGCTCCCTACGCCCATCCCCGAGGGCGCGGTGGTCGCGGTC
AAATAA
Translation:
MPLMWIVLVLALITGTWLSVQSDHATSSAELAEVDTLARSLLLFRSSLAEYAHANPGFTGSPADSALGLPAW
FRKPARLQGYIAAGTSYAFIASPPAGLAAAVDAGTESDLVGVRRNGQLVTRRLGATVIALPTPIPEGAVVAV
K*
AnnotationID:4656GeneID:4650
AnnotatorUID: diggins
Modification Date/Time: 2006-02-03 21:09:07
Gene Name:pilM2
Confidence Code:1
GeneProduct:type IV B pilus protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO59101.1| (AE016854) PilM protein, putative [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 146

 Score = 83.6 bits (205), Expect = 3e-16
 Identities = 45/144 (31%), Positives = 79/144 (54%), Gaps = 1/144 (0%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9301




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26442




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38322




  
Author/Investigator(s):
        Sakai D, Komano T.





  
Title:
        Genes required for plasmid R64 thin-pilus biogenesis: identification and localization of products of the pilK, pilM, pilO, pilP, pilR, and pilT genes.




  
PubMed:
        11751821


MedLine:
        




    
Source:
J Bacteriol. 2002 Jan;184(2):444-51.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=11751821

















    ReferenceID:38323




  
Author/Investigator(s):
        Martin PR, Watson AA, McCaul TF, Mattick JS.





  
Title:
        Characterization of a five-gene cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7565110


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):497-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565110&query_hl=4&itool=pubmed_docsum









           
Homologs By Global Alignment 

           

       



     
Gene ID:4650
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
185797
                           gb|AAP84202.1|
                           (AY273869) PilM2 [Pseudomonas aeruginosa]
                           145
                           99.99
                           99.99
                           0
                           724.0
     

     






      

          
GC ORFID: 47652How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL077Glimmer Score: 

          
Start: 4551327Stop: 4551764

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL077 pilM 145 Homolog: PilM / Type IVB pilus biosynthesis; Pathogenicity-related / S.typhimurium / plasmid R64 (BAB91693) translation of RL077Homolog Bit Score 283.0

          
Other Homologs:  t_RL077 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGCTGATGTGGATCGTCCTGGTGCTCGCGCTCATCACCGGGACCTGGCTGAGTGTACAAAGCGACCAC 
GCGACCTCGAGCGCCGAACTGGCCGAGGTCGACACCCTGGCCAGGAGCTTGCTGCTCTTCCGGTCCAGTCTG 
GCGGAGTACGCACACGCCAACCCCGGTTTCACCGGTTCGCCGGCGGACTCCGCTCTTGGTTTACCGGCCTGG 
TTCCGCAAGCCAGCGCGGCTTCAGGGCTACATCGCCGCCGGCACCAGCTACGCCTTCATCGCCTCGCCGCCG 
GCGGGGCTGGCGGCGGCCGTGGATGCTGGTACGGAATCCGACCTGGTTGGCGTCAGGCGCAACGGCCAGTTA 
GTCACGCGCCGCCTCGGAGCCACTGTCATTGCGCTCCCTACGCCCATCCCCGAGGGCGCGGTGGTCGCGGTC 
AAATAA