ViewGene
Locus Name:
GeneID:
Location:

GeneID:465
TrivialName: PA14_13740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13740
PAO1 Ortholog Locus:PA3878
Sequence Length:1869
Protein Length:622
Start: 1180642
Stop: 1178774
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07265.1|AE004805_3 (AE004805) two-component sensor NarX [Pseudomonas aeruginosa PAO1]
Identities = 621/622 (99%), Positives = 621/622 (99%)
Sequence:
ATGAACAAGGCGACCGCGCCGGACGCTGACCAGCGGGACAGATTCTTTGGAGGTAGTGACAGGGCCGGAAAG
CCGATCCTGCGCCGCTCCCTGGTAGTCCGCTTCGGCTGCTACCTCACCCTGCTGGTATCGCTGGCGCTGATC
GGGATGTTCAGCGCCCTGCTCTTCGCCGACTACACGCACCAGGACGCCGCGGTGATCAACCACGCCGGCTCG
TTGCGCATGCTCACCTACCGGGTCGCCCTGGAGCCCAGCCTGGAAGGCCGCCAGGCGCTGCTCGGGACCCTC
GGCGAACGCCTCGACAGCGGCGACATCCGCCGCCTGCTGCAACGCCAGGACGCCGACGACCCGATCCGCCAG
CTGCACCAGGAGCTGCGCGAGGGCCTGGCGCGCCTGGACCCGCGCGCGCTGCCCGGACGCGCCGTGCTGGAC
GCCTACGTCGGCGACATCGACCGTTTCGTCGGCATCCTCCAGGCCAAGGCCGAGCGCCGCTCGCAACTGCTC
AGCACGGTGCAGGGCCTGTGCCTGTTCCTCAGCCTGCTGGTGGTGTTCGTCACCCTCTACGACCTCAGCTAC
CACGTCATCGGCCCGCTGCGCGAACTCACCAGCACCGCCCGCCGCCTGGGCCGCGGCGAGCTGGACGCGCGG
GTCACCTACAGCGGCGAGGACGAACTGGCGCAACTGGGCGAGCGCTTCAACCAGATGGCCGGCGAGCTGAAG
AGCATCTACGGCGACCTGGAAGAGCGCGTGGAGGACAAGACCCGCGCCCTCTCGCAGAGCCACCAGCGCCTC
GAACTGCTCTACGCCAGTGCCCGCCGGCTGGGCGAGAACCCCTACGACAGCCGCACCCTGCAACCGCTGCTG
AACCAGTTGGAGAAAGTGCTAGACGCCGGCCGCGTGACCCTCTGCCTGAACAAGGACGGGGTCGAGCGCGCC
TACAGTTCGCTGACCACCACCGAGCGCCCGGCGGACTTCTGCCTGCAGGGCGACTGCGGTAGCTGCCGCGAG
CAGGCCAGCGCCTGCGACCAACCCTCGTCCCTGGCCCAGCCATTGCTGATGCAGCCCCTGTCCATCGCCGGC
CACCGTTTCGGCGAACTGTTCATCGAAAGCCGCAGCGGCCGCCTGGAGAACTGGCAGCAGCAACTGATCGAG
ACCTTCTGCGACAACATCGCCCGCACCTTCGCCCTGTCCCTGCAACAGGAACAGGAAAGCCGCCTGGCCCTG
TTCGCCGAGCGCGGCACCATCGCCCGTGAACTGCACGACTCGCTGGCACAGTCGCTGTCCTACCTGAAGATC
CAGGTCAGCCGCCTGGGCACCCTGCTCAAGCGCGAGGCGCCGGCGGAGAAGATCGAGGACACCCTCGACGAA
CTGCGCGAAGGCCTCAACGGCGCCTACCGGCAACTGCGCGAACTGCTCACCACCTTCCGCCTCAGCCTCGAC
GAGCCGAGCCTGGAAGCCGCGCTGGGGAACGCCGTGGCCGAGTTCGGCGAGCGCGGCGAGGTGGCGATCGAA
CTGGACAACCGCCTGCAACACGTGCCGCTGAGCCCCAACGAGGAAATCCACGTCCTGCAGATCGTCCGCGAG
GCGCTCTCCAACGTGGTTCGCCATTCGCAGGCGCAACGGGCCTGGGTGCGCCTGAGCAGCCAGGCCGACGGC
CAGGTGAGCATCGCCGTAGAGGACGATGGCGTCGGCTTTGATCCGCAGCAGAACCGCAGCGGCCACTATGGG
CTTACCATCATGCAGGAGCGCGGCCAGACCCTCGGCAGCCAGTTGCGCTTCGAAGCGCGCGCGCCCCACGGC
ACGCGAGTGCTCTTCAGCTTCGTGCCGACCGCCCTGCAACCCTCCGCCGCCAAGGAGCCGACCCCATGA
Translation:
MNKATAPDADQRDRFFGGSDRAGKPILRRSLVVRFGCYLTLLVSLALIGMFSALLFADYTHQDAAVINHAGS
LRMLTYRVALEPSLEGRQALLGTLGERLDSGDIRRLLQRQDADDPIRQLHQELREGLARLDPRALPGRAVLD
AYVGDIDRFVGILQAKAERRSQLLSTVQGLCLFLSLLVVFVTLYDLSYHVIGPLRELTSTARRLGRGELDAR
VTYSGEDELAQLGERFNQMAGELKSIYGDLEERVEDKTRALSQSHQRLELLYASARRLGENPYDSRTLQPLL
NQLEKVLDAGRVTLCLNKDGVERAYSSLTTTERPADFCLQGDCGSCREQASACDQPSSLAQPLLMQPLSIAG
HRFGELFIESRSGRLENWQQQLIETFCDNIARTFALSLQQEQESRLALFAERGTIARELHDSLAQSLSYLKI
QVSRLGTLLKREAPAEKIEDTLDELREGLNGAYRQLRELLTTFRLSLDEPSLEAALGNAVAEFGERGEVAIE
LDNRLQHVPLSPNEEIHVLQIVREALSNVVRHSQAQRAWVRLSSQADGQVSIAVEDDGVGFDPQQNRSGHYG
LTIMQERGQTLGSQLRFEARAPHGTRVLFSFVPTALQPSAAKEPTP*
AnnotationID:474GeneID:465
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 10:10:23
Gene Name:narX
Confidence Code:2
GeneProduct:putative nitrate/nitrite sensor protein; NarX
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3850
Secondary Functional Category(ies):
EC Number:2.7.3.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG34370.1|AF197465_2 (AF197465) nitrate/nitrite sensor protein; NarX [Pseudomonas
           fluorescens]
          Length = 599

 Score =  370 bits (951), Expect = e-101
 Identities = 226/602 (37%), Positives = 334/602 (55%), Gaps = 32/602 (5%)

>dbj|BAB84310.1| (AB076402) putative nitrate/nitrite sensor protein [Halomonas
           halodenitrificans]
          Length = 644

 Score =  337 bits (864), Expect = 1e-91
 Identities = 224/610 (36%), Positives = 331/610 (54%), Gaps = 29/610 (4%)








 
Structural Features:
COG3850, NarQ, Signal transduction histidine kinase, nitrate/nitrite-specific 
[Signal transduction mechanisms]
CD-Length = 574 residues, 100.0% aligned
Score =  601 bits (1550), Expect = 2e-172
Identities = 254/596 (42%), Positives = 331/596 (55%), Gaps = 29/596 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:933




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18075




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31686




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:465_cdd.html


    		




 
URL:

















    ReferenceID:34339




  
Author/Investigator(s):
        Nohno T, Noji S, Taniguchi S, Saito T.





  
Title:
        The narX and narL genes encoding the nitrate-sensing regulators of Escherichia coli are homologous to a family of prokaryotic two-component regulatory genes.




  
PubMed:
        2657652


MedLine:
        




    
Source:
Nucleic Acids Res. 1989 Apr 25;17(8):2947-57.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2657652

















    ReferenceID:34340




  
Author/Investigator(s):
        Stewart V, Parales J Jr, Merkel SM.





  
Title:
        Structure of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12.




  
PubMed:
        2649492


MedLine:
        




    
Source:
J Bacteriol. 1989 Apr;171(4):2229-34.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2649492









           
Homologs By Global Alignment 

           

       



     
Gene ID:465
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
801
                           PA3878_tr
                           translation of PA3878
                           622
                           99.83
                           99.83
                           0
                           3125.0
     

     
     
34193
                           gb|AAG07265.1|AE004805_3
                           (AE004805) two-component sensor NarX [Pseudomonas aeruginosa PAO1]
                           622
                           99.83
                           99.83
                           0
                           3125.0
     

     
     
34194
                           emb|CAA75537.1|
                           (Y15252) nitrate/nitrite sensory protein [Pseudomonas aeruginosa]
                           622
                           99.83
                           99.83
                           0
                           3125.0
     

     






      

          
GC ORFID: 43467How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3878Glimmer Score: 

          
Start: 3773296Stop: 3775164

          
Length: 1869


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3878 translation of PA3878Homolog Bit Score 1208.0

          
Other Homologs:  t_PA3878 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGGCGACCGCGCCGGACGCTGACCAGCGGGACAGATTCTTTGGAGGTAGTGACAGGGCCGGAAAG 
CCGATCCTGCGCCGCTCCCTGGTAGTCCGCTTCGGCTGCTACCTCACCCTGCTGGTATCGCTGGCGCTGATC 
GGGATGTTCAGCGCCCTGCTCTTCGCCGACTACACGCACCAGGACGCCGCGGTGATCAACCACGCCGGCTCG 
TTGCGCATGCTCACCTACCGGGTCGCCCTGGAGCCCAGCCTGGAAGGCCGCCAGGCGCTGCTCGGGACCCTC 
GGCGAACGCCTCGACAGCGGCGACATCCGCCGCCTGCTGCAACGCCAGGACGCCGACGACCCGATCCGCCAG 
CTGCACCAGGAGCTGCGCGAGGGCCTGGCGCGCCTGGACCCGCGCGCGCTGCCCGGACGCGCCGTGCTGGAC 
GCCTACGTCGGCGACATCGACCGTTTCGTCGGCATCCTCCAGGCCAAGGCCGAGCGCCGCTCGCAACTGCTC 
AGCACGGTGCAGGGCCTGTGCCTGTTCCTCAGCCTGCTGGTGGTGTTCGTCACCCTCTACGACCTCAGCTAC 
CACGTCATCGGCCCGCTGCGCGAACTCACCAGCACCGCCCGCCGCCTGGGCCGCGGCGAGCTGGACGCGCGG 
GTCACCTACAGCGGCGAGGACGAACTGGCGCAACTGGGCGAGCGCTTCAACCAGATGGCCGGCGAGCTGAAG 
AGCATCTACGGCGACCTGGAAGAGCGCGTGGAGGACAAGACCCGCGCCCTCTCGCAGAGCCACCAGCGCCTC 
GAACTGCTCTACGCCAGTGCCCGCCGGCTGGGCGAGAACCCCTACGACAGCCGCACCCTGCAACCGCTGCTG 
AACCAGTTGGAGAAAGTGCTAGACGCCGGCCGCGTGACCCTCTGCCTGAACAAGGACGGGGTCGAGCGCGCC 
TACAGTTCGCTGACCACCACCGAGCGCCCGGCGGACTTCTGCCTGCAGGGCGACTGCGGTAGCTGCCGCGAG 
CAGGCCAGCGCCTGCGACCAACCCTCGTCCCTGGCCCAGCCATTGCTGATGCAGCCCCTGTCCATCGCCGGC 
CACCGTTTCGGCGAACTGTTCATCGAAAGCCGCAGCGGCCGCCTGGAGAACTGGCAGCAGCAACTGATCGAG 
ACCTTCTGCGACAACATCGCCCGCACCTTCGCCCTGTCCCTGCAACAGGAACAGGAAAGCCGCCTGGCCCTG 
TTCGCCGAGCGCGGCACCATCGCCCGTGAACTGCACGACTCGCTGGCACAGTCGCTGTCCTACCTGAAGATC 
CAGGTCAGCCGCCTGGGCACCCTGCTCAAGCGCGAGGCGCCGGCGGAGAAGATCGAGGACACCCTCGACGAA 
CTGCGCGAAGGCCTCAACGGCGCCTACCGGCAACTGCGCGAACTGCTCACCACCTTCCGCCTCAGCCTCGAC 
GAGCCGAGCCTGGAAGCCGCGCTGGGGAACGCCGTGGCCGAGTTCGGCGAGCGCGGCGAGGTGGCGATCGAA 
CTGGACAACCGCCTGCAACACGTGCCGCTGAGCCCCAACGAGGAAATCCACGTCCTGCAGATCGTCCGCGAG 
GCGCTCTCCAACGTGGTTCGCCATTCGCAGGCGCAACGGGCCTGGGTGCGCCTGAGCAGCCAGGCCGACGGC 
CAGGTGAGCATCGCCGTAGAGGACGATGGCGTCGGCTTTGATCCGCAGCAGAACCGCAGCGGCCACTATGGG 
CTTACCATCATGCAGGAGCGCGGCCAGACCCTCGGCAGCCAGTTGCGCTTCGAAGCGCGCGCGCCCCACGGC 
ACGCGAGTGCTCTTCAGCTTCGTGCCGACCGCCCTGCAACCCTCCGCCGCCAAGGAGCCGACCCCATGA