ViewGene
Locus Name:
GeneID:
Location:

GeneID:4649
TrivialName: PA14_08380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08380
PAO1 Ortholog Locus:PA0653
Sequence Length:423
Protein Length:140
Start: 717928
Stop: 718350
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04042.1|AE004500_8 (AE004500) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/140 (100%), Positives = 140/140 (100%)
Sequence:
ATGAAAGCGCGTATCCAGTGGGCGGGCGAGGCGATGTTCCTCGGCGAGTCCGGTAGCGGCCACGTGGTGGTC
ATGGACGGTCCGCCGGACCATGGCGGACGCAACCTCGGGGTGCGCCCTATGGAGATGGTCCTGATCGGCCTC
GGCGGCTGCACCAACTTCGATGTGGTCAGCATCCTGAAGAAGGCGCGCCAGCCGGTGGAGAGCTGCGAAGCC
TTCCTcgAGGCCGAAAGGGCCGACGAGGAGCCCAAGGTGTTCACGAAGATCCACGTGCACTTCGTGGTCAAG
GGCCGCGGTCTCAAGGAGGCCCAGGTCAAGCGCGCGGTGGAGCTGTCGGCGGAGAAATACTGCTCGGCGTCG
ATCATGCTCGGTCGCGGCGGGGTGGAGATCACCCACGACTACGAGATCGTCGAACTCGGCTGA
Translation:
MKARIQWAGEAMFLGESGSGHVVVMDGPPDHGGRNLGVRPMEMVLIGLGGCTNFDVVSILKKARQPVESCEA
FLEAERADEEPKVFTKIHVHFVVKGRGLKEAQVKRAVELSAEKYCSASIMLGRGGVEITHDYEIVELG*
AnnotationID:4655GeneID:4649
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative redox protein
Cell Localization:()
Synonyms:PA0653
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1765,pfam02566
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54139.1| (AE016858) OsmC/Ohr family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 140

 Score =  267 bits (683), Expect = 6e-72
 Identities = 129/140 (92%), Positives = 137/140 (97%)






 
Structural Features:
COG1765, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 137 residues,  98.5% aligned
Score =  141 bits (357), Expect = 2e-35
Identities = 66/137 (48%), Positives = 89/137 (64%), Gaps = 2/137 (1%)

pfam02566, OsmC, OsmC-like protein.
CD-Length = 133 residues, 100.0% aligned
Score =  131 bits (331), Expect = 3e-32
Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 2/135 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9299




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26440




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34612




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4649_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4649
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7017
                           PA0653_tr
                           translation of PA0653
                           140
                           99.99
                           99.99
                           0
                           725.0
     

     
     
185764
                           gb|AAG04042.1|AE004500_8
                           (AE004500) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           140
                           99.99
                           99.99
                           0
                           725.0
     

     
     
185765
                           gb|AAC45224.1|
                           (U89892) ORFX [Pseudomonas aeruginosa]
                           140
                           99.99
                           99.99
                           0
                           725.0
     

     
     
185766
                           gb|AAO54139.1|
                           (AE016858) OsmC/Ohr family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           140
                           92.14
                           97.85
                           0
                           683.0
     

     
     
185767
                           gb|AAN66055.1|AE016234_8
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           140
                           89.28
                           95.71
                           0
                           646.0
     

     






      

          
GC ORFID: 47651How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0653Glimmer Score: 

          
Start: 6519271Stop: 6519693

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0653 translation of PA0653Homolog Bit Score 283.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2361 (ORF: BLASTX 267.0), t_PA0653 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCGCGTATCCAGTGGGCGGGCGAGGCGATGTTCCTCGGCGAGTCCGGTAGCGGCCACGTGGTGGTC 
ATGGACGGTCCGCCGGACCATGGCGGACGCAACCTCGGGGTGCGCCCTATGGAGATGGTCCTGATCGGCCTC 
GGCGGCTGCACCAACTTCGATGTGGTCAGCATCCTGAAGAAGGCGCGCCAGCCGGTGGAGAGCTGCGAAGCC 
TTCCTcgAGGCCGAAAGGGCCGACGAGGAGCCCAAGGTGTTCACGAAGATCCACGTGCACTTCGTGGTCAAG 
GGCCGCGGTCTCAAGGAGGCCCAGGTCAAGCGCGCGGTGGAGCTGTCGGCGGAGAAATACTGCTCGGCGTCG 
ATCATGCTCGGTCGCGGCGGGGTGGAGATCACCCACGACTACGAGATCGTCGAACTCGGCTGA