ViewGene
Locus Name:
GeneID:
Location:

GeneID:4648
TrivialName: PA14_73030
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73030
PAO1 Ortholog Locus:PA5537
Sequence Length:417
Protein Length:138
Start: 6503220
Stop: 6503636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08922.1|AE004966_4 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/138 (99%), Positives = 137/138 (99%)
Sequence:
ATGCGCCGCGTCCTCCACCTTTACTGCCTGGCCCTCCTGCTGCTCGCTCCGGCGGCACAGGCGCAGGGCTTT
CTTCCCGGCACCCGCCCGGCGGAATGCGCTTACCTGCGCACCGTTCTGGCCTGCATGGATCGGCTGGGCAAC
CACTACAGCGTCGCCACCGGCGGCAACGACACCTGGCTGCGCGGATACGACGCGGCAAGCGGACGACGCTGG
GCCCAGACCAATACGCGCTACGGGCGCCTGACCTTCTTCAGCGGCATCGCCAGCGACGGGGAAATCTGGGTC
GGCCTCAGCCGCAACATCGGCTGGACCAGCGTCAGCCGCCTGAGCAGTTCATCGGGCCAGCGCCAACGCCTG
ACCTGCGGGCGGGTCAGCGGCTGCAGCGAAGGCCCTAGCCGGGAGGCTGCGCGCTGA
Translation:
MRRVLHLYCLALLLLAPAAQAQGFLPGTRPAECAYLRTVLACMDRLGNHYSVATGGNDTWLRGYDAASGRRW
AQTNTRYGRLTFFSGIASDGEIWVGLSRNIGWTSVSRLSSSSGQRQRLTCGRVSGCSEGPSREAAR*
AnnotationID:4654GeneID:4648
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:59
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5537
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9297




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26438




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4648
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7016
                           PA5537_tr
                           translation of PA5537
                           138
                           99.27
                           99.27
                           0
                           723.0
     

     
     
185761
                           gb|AAG08922.1|AE004966_4
                           (AE004966) hypothetical protein PA5537 [Pseudomonas aeruginosa PAO1]
                           138
                           99.27
                           99.27
                           0
                           723.0
     

     
     
185762
                           gb|AAO58946.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           142
                           48.59
                           61.26
                           14
                           343.0
     

     
     
185763
                           gb|AAN70927.1|AE016736_10
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           140
                           46.42
                           60.00
                           16
                           322.0
     

     






      

          
GC ORFID: 47650How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5537Glimmer Score: 

          
Start: 5766909Stop: 5767325

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5537 translation of PA5537Homolog Bit Score 283.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2925 (ORF: BLASTX 137.0), t_PA5537 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGCGTCCTCCACCTTTACTGCCTGGCCCTCCTGCTGCTCGCTCCGGCGGCACAGGCGCAGGGCTTT 
CTTCCCGGCACCCGCCCGGCGGAATGCGCTTACCTGCGCACCGTTCTGGCCTGCATGGATCGGCTGGGCAAC 
CACTACAGCGTCGCCACCGGCGGCAACGACACCTGGCTGCGCGGATACGACGCGGCAAGCGGACGACGCTGG 
GCCCAGACCAATACGCGCTACGGGCGCCTGACCTTCTTCAGCGGCATCGCCAGCGACGGGGAAATCTGGGTC 
GGCCTCAGCCGCAACATCGGCTGGACCAGCGTCAGCCGCCTGAGCAGTTCATCGGGCCAGCGCCAACGCCTG 
ACCTGCGGGCGGGTCAGCGGCTGCAGCGAAGGCCCTAGCCGGGAGGCTGCGCGCTGA