ViewGene

Locus Name:
GeneID:
Location:

GeneID:4646
TrivialName: PA14_67620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67620
PAO1 Ortholog Locus:PA5120
Sequence Length:405
Protein Length:134
Start: 6040294
Stop: 6040698
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08505.1|AE004925_3 (AE004925) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/134 (99%), Positives = 133/134 (99%)
Sequence:
ATGCGTCACTCTCTCTGGCTCCTGCTTGCCGCCATCCTCAGCCTGCCCGCCCAGGCCGCCACCGAATGCCGC
GATATCCACGACCGCGACCTGCGGCGCATGTGCAACGCACTGGAACGCGGCGACAGCGGGGATTGCGGCGAC
ATCGACAGCCGCGACATGCGGCGTTACTGCGGCGCGCTGCTGGCGCCGGGACAGCGCTACGACTGCGACGAC
ATCCGCGACGGCGACACGCGCCGCCAGTGCCGCGCCATCGTCCGCGGCGACCGCAAGCGCTGCGACGACATC
GACAGCCGCGACATGCGCCGCCAGTGCCGGGCCGTGGTATCGCGTGCGCCGTGGCAGTGCGACGGCATCGAC
GACCGCGACATGCGCCGCATCTGTCGGGTCATCCTGTCGCGCTAG
Translation:
MRHSLWLLLAAILSLPAQAATECRDIHDRDLRRMCNALERGDSGDCGDIDSRDMRRYCGALLAPGQRYDCDD
IRDGDTRRQCRAIVRGDRKRCDDIDSRDMRRQCRAVVSRAPWQCDGIDDRDMRRICRVILSR*
AnnotationID:4652GeneID:4646
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 09:09:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA5120
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9293
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26434
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4646

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7014 PA5120_tr translation of PA5120 134 99.25 99.25 0 723.0
185744 gb|AAG08505.1|AE004925_3 (AE004925) hypothetical protein PA5120 [Pseudomonas aeruginosa PAO1] 134 99.25 99.25 0 723.0
GC ORFID: 47648How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5120Glimmer Score:
Start: 5303979Stop: 5304383
Length: 405
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA5120 translation of PA5120Homolog Bit Score 283.0
Other Homologs: t_PA5120 (ORF: GLIMMER)
GC ORF Sequence
ATGCGTCACTCTCTCTGGCTCCTGCTTGCCGCCATCCTCAGCCTGCCCGCCCAGGCCGCCACCGAATGCCGC
GATATCCACGACCGCGACCTGCGGCGCATGTGCAACGCACTGGAACGCGGCGACAGCGGGGATTGCGGCGAC
ATCGACAGCCGCGACATGCGGCGTTACTGCGGCGCGCTGCTGGCGCCGGGACAGCGCTACGACTGCGACGAC
ATCCGCGACGGCGACACGCGCCGCCAGTGCCGCGCCATCGTCCGCGGCGACCGCAAGCGCTGCGACGACATC
GACAGCCGCGACATGCGCCGCCAGTGCCGGGCCGTGGTATCGCGTGCGCCGTGGCAGTGCGACGGCATCGAC
GACCGCGACATGCGCCGCATCTGTCGGGTCATCCTGTCGCGCTAG