ViewGene

Locus Name:
GeneID:
Location:

GeneID:4643
TrivialName: PA14_16010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16010
PAO1 Ortholog Locus:PA3741
Sequence Length:426
Protein Length:141
Start: 1363148
Stop: 1363573
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07128.1|AE004793_5 (AE004793) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGACCCCCAGAGAGCAAGAAATCCTGCGTCGCACCGAGCTTTCCGAAACCCGTGTGACCAAGGCGGTATTC
CCGCCCACCACCAATCACCACAACACCCTGTTCGGCGGGACTGCGCTGGCCTGGATGGACGAGGTCTCGTTC
ATCACCGCGACCCGTTTCTGCCGCCTGCCGCTGGTGACCGTTTCCACCGATCGCATCGACTTCAACCACCCG
ATCCCGGCGGGCTCGATCGTCGAGTTGGTCGGCCGGGTGGTCAAGGTCGGCAACACCAGCCTCAAGGTGGAG
GTCGAGGTGTACCTGGAAAGCATGTACGCCGACGGTCGCGAGAAGGCCATACACGGCCTGTTCAGCTTCGTC
GCCATCGACGACGAAAAGCGGCCGGTTCCGGTCCTGCCGGGGTTCCCGGCCAGCCAGGCGGCTTGA
Translation:
MTPREQEILRRTELSETRVTKAVFPPTTNHHNTLFGGTALAWMDEVSFITATRFCRLPLVTVSTDRIDFNHP
IPAGSIVELVGRVVKVGNTSLKVEVEVYLESMYADGREKAIHGLFSFVAIDDEKRPVPVLPGFPASQAA*
AnnotationID:4649GeneID:4643
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 09:09:22
Gene Name:
Confidence Code:3
GeneProduct:putative ong-chain acyl-CoA thioester hydrolase
Cell Localization:()
Synonyms:PA3741
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1607
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67088.1|AE016337_11 (AE016779) long-chain acyl-CoA thioester hydrolase family protein
           [Pseudomonas putida KT2440]
          Length = 135

 Score =  236 bits (601), Expect = 2e-62
 Identities = 114/134 (85%), Positives = 126/134 (94%)

>gb|AAN55675.1|AE015706_3 (AE015706) cytosolic long-chain acyl-CoA thioester hydrolase family
           protein [Shewanella oneidensis MR-1]
          Length = 143

 Score =  170 bits (431), Expect = 1e-42
 Identities = 81/124 (65%), Positives = 97/124 (78%)
Structural Features:
COG1607, Acyl-CoA hydrolase [Lipid metabolism]
CD-Length = 157 residues,  87.3% aligned
Score =  146 bits (369), Expect = 2e-36
Identities = 53/140 (37%), Positives = 75/140 (53%), Gaps = 3/140 (2%)

Genomic Context:
Comment:
ReferenceID:9287
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26428
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31817
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4643_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4643

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7011 PA3741_tr translation of PA3741 141 99.99 99.99 0 724.0
185689 gb|AAG07128.1|AE004793_5 (AE004793) hypothetical protein PA3741 [Pseudomonas aeruginosa PAO1] 141 99.99 99.99 0 724.0
185690 gb|AAN67088.1|AE016337_11 (AE016779) long-chain acyl-CoA thioester hydrolase family protein [Pseudomonas putida KT2440] 141 80.85 89.36 6 599.0
185691 gb|AAN55675.1|AE015706_3 (AE015706) cytosolic long-chain acyl-CoA thioester hydrolase family protein [Shewanella oneidensis MR-1] 149 54.36 65.10 14 418.0
185692 gb|AAF12545.1|AE001826_14 (AE001826) conserved hypothetical protein [Deinococcus radiodurans] [Deinococcus radiodurans R1] 157 42.03 55.41 26 319.0
GC ORFID: 47645How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3741Glimmer Score:
Start: 3590789Stop: 3590364
Length: 426
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3741 translation of PA3741Homolog Bit Score 283.0
Other Homologs: t_PA3741 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCCCAGAGAGCAAGAAATCCTGCGTCGCACCGAGCTTTCCGAAACCCGTGTGACCAAGGCGGTATTC
CCGCCCACCACCAATCACCACAACACCCTGTTCGGCGGGACTGCGCTGGCCTGGATGGACGAGGTCTCGTTC
ATCACCGCGACCCGTTTCTGCCGCCTGCCGCTGGTGACCGTTTCCACCGATCGCATCGACTTCAACCACCCG
ATCCCGGCGGGCTCGATCGTCGAGTTGGTCGGCCGGGTGGTCAAGGTCGGCAACACCAGCCTCAAGGTGGAG
GTCGAGGTGTACCTGGAAAGCATGTACGCCGACGGTCGCGAGAAGGCCATACACGGCCTGTTCAGCTTCGTC
GCCATCGACGACGAAAAGCGGCCGGTTCCGGTCCTGCCGGGGTTCCCGGCCAGCCAGGCGGCTTGA