ViewGene
Locus Name:
GeneID:
Location:

GeneID:4642
TrivialName: PA14_20240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20240
PAO1 Ortholog Locus:PA3389
Sequence Length:414
Protein Length:137
Start: 1745097
Stop: 1744684
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06778.1|AE004760_6 (AE004760) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
Identities = 136/137 (99%), Positives = 137/137 (100%)
Sequence:
ATGTCCGACCGCCCTGCCCGCCCCTCCCGCCTCAACGGCCTGCGTCACCTCGCCCTGCTGGTGCCCAACCTG
GAAGAATGCGAGCGCTTCTATATCGACGTGCTGGGCATGGAAGTGCTGAACCGCGCCAACGAAGACCTGGTG
TATCTCACCTGCGGCAACGACAACCTTTCCCTCGGCCGCGCCCACGCCGCCAGCAACGGCCTGCAGACCATG
GATCACTACGGCTTCGTCGTCGACAGCGTGGAGGAACTGGAAGCCTGGTACCGTTACCTGAAGGCGCTGGGC
GTGACCCTGCTCGACCAACCCTTCGACCACGGCGACGGCGCGCGCAGCTTCCACCTGCTCGACCCGGCGGGC
AACAAGGTGCAGCCGCTGTACCATCCGGCGGTATCCGGGCAGCGCCTGGCCTGA
Translation:
MSDRPARPSRLNGLRHLALLVPNLEECERFYIDVLGMEVLNRANEDLVYLTCGNDNLSLGRAHAASNGLQTM
DHYGFVVDSVEELEAWYRYLKALGVTLLDQPFDHGDGARSFHLLDPAGNKVQPLYHPAVSGQRLA*
AnnotationID:4648GeneID:4642
AnnotatorUID: diggins
Modification Date/Time: 2005-08-21 16:04:48
Gene Name:
Confidence Code:3
GeneProduct:putative ring-cleaving dioxygenase
Cell Localization:()
Synonyms:PA3389
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00903
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70278.1|AE016668_4 (AE016791) ring-cleaving dioxygenase, putative [Pseudomonas putida
           KT2440]
          Length = 137

 Score =  256 bits (653), Expect = 2e-68
 Identities = 120/136 (88%), Positives = 129/136 (94%)







 
Structural Features:
pfam00903, Glyoxalase, Glyoxalase / Bleomycin resistance protein / 
Dioxygenase superfamily.
CD-Length = 120 residues,  99.2% aligned
Score = 71.3 bits (174), Expect = 4e-14
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 7/119 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9285




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26426




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32173




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4642_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4642
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7010
                           PA3389_tr
                           translation of PA3389
                           137
                           99.27
                           99.99
                           0
                           723.0
     

     
     
185687
                           gb|AAG06778.1|AE004760_6
                           (AE004760) probable ring-cleaving dioxygenase [Pseudomonas aeruginosa PAO1]
                           137
                           99.27
                           99.99
                           0
                           723.0
     

     
     
185688
                           gb|AAN70278.1|AE016668_4
                           (AE016791) ring-cleaving dioxygenase, putative [Pseudomonas putida KT2440]
                           137
                           87.59
                           94.16
                           0
                           653.0
     

     






      

          
GC ORFID: 47644How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3389Glimmer Score: 

          
Start: 3208835Stop: 3209248

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3389 translation of PA3389Homolog Bit Score 283.0

          
Other Homologs:  t_PA3389 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGACCGCCCTGCCCGCCCCTCCCGCCTCAACGGCCTGCGTCACCTCGCCCTGCTGGTGCCCAACCTG 
GAAGAATGCGAGCGCTTCTATATCGACGTGCTGGGCATGGAAGTGCTGAACCGCGCCAACGAAGACCTGGTG 
TATCTCACCTGCGGCAACGACAACCTTTCCCTCGGCCGCGCCCACGCCGCCAGCAACGGCCTGCAGACCATG 
GATCACTACGGCTTCGTCGTCGACAGCGTGGAGGAACTGGAAGCCTGGTACCGTTACCTGAAGGCGCTGGGC 
GTGACCCTGCTCGACCAACCCTTCGACCACGGCGACGGCGCGCGCAGCTTCCACCTGCTCGACCCGGCGGGC 
AACAAGGTGCAGCCGCTGTACCATCCGGCGGTATCCGGGCAGCGCCTGGCCTGA