ViewGene
Locus Name:
GeneID:
Location:

GeneID:4641
TrivialName: PA14_42430
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:51
LocusName:PA14_42430
PAO1 Ortholog Locus:PA1710
Sequence Length:438
Protein Length:145
Start: 3778937
Stop: 3778500
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05099.1|AE004597_13 (AE004597) exoenzyme S synthesis protein C precursor [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 144/145 (99%)
Sequence:
ATGGATTTAACGAGCAAGGTCAACCGACTGCTTGCCGAGTTCGCAGGCCGTATCGGTTTGCCTTCCCTGTCC
CTCGACGAAGAGGGCATGGCGAGCCTGCTGTTCGACGAACAGGTGGGCGTCACCCTGTTGCTGCTCGCCGAG
CGCGAGCGTCTGTTGCTGGAGGCCGATGTGGCGGGCATCGATGTGCTGGGCGAGGGGATCTTTCGCCAGCTC
GCCAGCTTCAACCGCCATTGGCACCGTTTCGATCTGCATTTCGGCTTCGACGAGCTGACCGGCAAGGTCCAG
TTGTATGCGCAGATTCTCGCAGCGCAACTGACCCTCGAATGCTTCGAGGCGACCCTGGCCAACCTGCTCGAC
CACGCCGAGTTCTGGCAACGCCTGCTGCCGTGCGGCAGCGATCGCGAGGCGGTCGCTGCGGTCGGCATGAGG
GTTTGA
Translation:
MDLTSKVNRLLAEFAGRIGLPSLSLDEEGMASLLFDEQVGVTLLLLAERERLLLEADVAGIDVLGEGIFRQL
ASFNRHWHRFDLHFGFDELTGKVQLYAQILAAQLTLECFEATLANLLDHAEFWQRLLPCGSDREAVAAVGMR
V*
AnnotationID:4647GeneID:4641
AnnotatorUID: danlee
Modification Date/Time: 2005-07-28 16:04:14
Gene Name:exsC
Confidence Code:1
GeneProduct:exoenzyme S synthesis protein C precursor
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9283




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26424




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4641
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7009
                           PA1710_tr
                           translation of PA1710
                           145
                           99.31
                           99.31
                           0
                           725.0
     

     
     
185682
                           gb|AAG05099.1|AE004597_13
                           (AE004597) exoenzyme S synthesis protein C precursor [Pseudomonas aeruginosa PAO1]
                           145
                           99.31
                           99.31
                           0
                           725.0
     

     
     
185683
                           gb|AAA25814.1|
                           (M64975) S synthesis trans-regulatory protein [Pseudomonas aeruginosa]
                           145
                           99.31
                           99.31
                           0
                           725.0
     

     
     
185684
                           gb|AAC46214.1|
                           (AF035922) ExsC [Pseudomonas aeruginosa]
                           146
                           81.50
                           82.19
                           16
                           574.0
     

     
     
185685
                           gb|AAO18057.1|
                           (AY144116) LscY [Photorhabdus luminescens]
                           147
                           55.10
                           77.55
                           2
                           416.0
     

     






      

          
GC ORFID: 47643How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1710Glimmer Score: 

          
Start: 1174972Stop: 1175409

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1710 translation of PA1710Homolog Bit Score 283.0

          
Other Homologs:  t_PA1710 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATTTAACGAGCAAGGTCAACCGACTGCTTGCCGAGTTCGCAGGCCGTATCGGTTTGCCTTCCCTGTCC 
CTCGACGAAGAGGGCATGGCGAGCCTGCTGTTCGACGAACAGGTGGGCGTCACCCTGTTGCTGCTCGCCGAG 
CGCGAGCGTCTGTTGCTGGAGGCCGATGTGGCGGGCATCGATGTGCTGGGCGAGGGGATCTTTCGCCAGCTC 
GCCAGCTTCAACCGCCATTGGCACCGTTTCGATCTGCATTTCGGCTTCGACGAGCTGACCGGCAAGGTCCAG 
TTGTATGCGCAGATTCTCGCAGCGCAACTGACCCTCGAATGCTTCGAGGCGACCCTGGCCAACCTGCTCGAC 
CACGCCGAGTTCTGGCAACGCCTGCTGCCGTGCGGCAGCGATCGCGAGGCGGTCGCTGCGGTCGGCATGAGG 
GTTTGA