ViewGene
Locus Name:
GeneID:
Location:

GeneID:4640
TrivialName: PA14_45450
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45450
PAO1 Ortholog Locus:PA1468
Sequence Length:417
Protein Length:138
Start: 4047325
Stop: 4046909
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04857.1|AE004576_6 (AE004576) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/138 (99%), Positives = 137/138 (99%)
Sequence:
ATGCCTGCAATACCCCTGCGCGCCATGGTGCTGTGCGCCAACCCCGGCCGTCTGCTCAGGTACGGAGCGCTG
TTCAACCGCTGCGGCTACTTCCACCTGAGCCTGTGCCTGGACCGACGGGAGCTGCGGCGCTCCCTGGACCAG
GGTTACCCGTACGACTATTTCCTCTACGACGGATTCCGCCTGGACCAGGGCTGCAAGGGCACGCTGGCGATG
CTGGGACGCAGCGGCAGCATCCGGCGCTTCCTGCTGGTGGGCGAACTCGATTGCCGCGAGAAGCGCCTGTTG
TTCGAGTGGAGCAGAGGCCATGGCCTGAGCATCGGCGCGGTGTCCGACCGGCCTTTGGGCCAGGTCGCCCTG
GCCGCGTTGATCAAGCGTGATCGCGGCTGTCCCGACCTCCTGCGCGGTATCGCCTGA
Translation:
MPAIPLRAMVLCANPGRLLRYGALFNRCGYFHLSLCLDRRELRRSLDQGYPYDYFLYDGFRLDQGCKGTLAM
LGRSGSIRRFLLVGELDCREKRLLFEWSRGHGLSIGAVSDRPLGQVALAALIKRDRGCPDLLRGIA*
AnnotationID:4646GeneID:4640
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:04
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1468
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9281




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26422




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4640
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7008
                           PA1468_tr
                           translation of PA1468
                           138
                           99.27
                           99.27
                           0
                           724.0
     

     
     
185681
                           gb|AAG04857.1|AE004576_6
                           (AE004576) hypothetical protein PA1468 [Pseudomonas aeruginosa PAO1]
                           138
                           99.27
                           99.27
                           0
                           724.0
     

     






      

          
GC ORFID: 47642How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1468Glimmer Score: 

          
Start: 906584Stop: 907000

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1468 translation of PA1468Homolog Bit Score 283.0

          
Other Homologs:  t_PA1468 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTGCAATACCCCTGCGCGCCATGGTGCTGTGCGCCAACCCCGGCCGTCTGCTCAGGTACGGAGCGCTG 
TTCAACCGCTGCGGCTACTTCCACCTGAGCCTGTGCCTGGACCGACGGGAGCTGCGGCGCTCCCTGGACCAG 
GGTTACCCGTACGACTATTTCCTCTACGACGGATTCCGCCTGGACCAGGGCTGCAAGGGCACGCTGGCGATG 
CTGGGACGCAGCGGCAGCATCCGGCGCTTCCTGCTGGTGGGCGAACTCGATTGCCGCGAGAAGCGCCTGTTG 
TTCGAGTGGAGCAGAGGCCATGGCCTGAGCATCGGCGCGGTGTCCGACCGGCCTTTGGGCCAGGTCGCCCTG 
GCCGCGTTGATCAAGCGTGATCGCGGCTGTCCCGACCTCCTGCGCGGTATCGCCTGA