ViewGene
Locus Name:
GeneID:
Location:

GeneID:464
TrivialName: PA14_41280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41280
PAO1 Ortholog Locus:PA1797
Sequence Length:1833
Protein Length:610
Start: 3684343
Stop: 3686175
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05186.1|AE004605_8 (AE004605) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 599/610 (98%), Positives = 604/610 (99%)
Sequence:
ATGTTTCGCGCCATGCACCTTCCCCTTCTCGGCTGCCTGCTCGGCACCAGCGGCTGCCACGGCCTGCCACCC
GCCCCGCCAGCGCCGAGCGCCGCCGTGGGCAACTACGGCGAGGTCATCGACTATCTGCAACGCCACATCCGC
CGGGAAATGGAAAGGCAGGACGTGCCCGGCCTGGCCCTGGCATTGGTCGACGACCAGCAACTGGTCTGGGCT
CGCGGTTTCGGCTATGCCGACCGACAGCACAGGATCAACGCCAGCGAGCACACCGCATTCCACGCCGGCGAC
CTGTCCAAGCTACTGATCGCCAGCGCGACCCTGCAACTGGCCGAACGCGGCCAACTCTCTCTCGACGCTCCG
CTCCAGGACACCTTGCGCGAGTTCTACGTACGCTCACGCTTCCATGCCGACCAGAGCGAGGCGGATCGCGCG
ATCACTTTCCGCCGGCTGCTCAGCCATCAGTCCGGCCTTCCTGGCGAACACCTGCCGCCCCTGTTCGGCGAA
CGCCCGAACTCACTCGGCCAACTGCCGGCGAAAGTATCCGGTGTCTGGCTGAGCAATCCGCCGGGAACCCAG
GTCGCCCATTCCAACCTTGGCTACGAACTGGTCGGCGCGGCCATCGAGCGCAACACCGGAAAGCACTTCGAG
CAGCACATGCGCGAGCACCTGCTGGAGCCTTTGCAGATGACCCGCTCCAGCTTCGCCAGGAACGCCCTGCCC
CAGGCGCAACGCGCACACGGCTACAGCGGCGGCGGTCGCCCCGGCTCCGCCAGCGACCTCCCGGTCAACGAT
CTGTGGAGCAGCCCGGTCGACCTCAGCCGCTTCGTCCGCATGCTGTTCGCCAACGGGCGCCACAAGGAGCGC
CAGCTTCTCAGGAAACACTCCGTCGAGGAGATGTTCCGCCAGCAGAACGCCGGCAATGCCCTGGACTTCGAC
TGCCAGGTGGGCCTGGCCTGGTTCCTCAGCCCGTGCGGCTCCGCGCCGCTGGAAGGGGGCATCCGTCACTAT
GAGTACGCCAGCGCCACCCCAGGATTCAGCGCCCACCTGGTTCTGCTGCCGGAACAGCGCCTCGCCGCCATT
GTCATGAGCAACGCCGATGACCGCGGTTCGCTCACCGCCTCCCTGGCCCGGCAAGCGGCGTCGCTCATGCTG
CAGGTCAGGCAGGGCGCTCGTCGCCCCGCCGTACAGCCCACCCCCGCGCGCGCCCCCGCACTGAAGGTGCCG
AGCCCGGAGGACCGGCGTCAGCTATACGGTCGTTACGCAACCCGCCAAGGCCAGGTTCGCCTGTACGAGCGC
AGGGGTCGCCTGTACGCGGATTTCGGCGAACAACGCGTGGAATTGTTGCGCGACACCTCGGGCTGGCTGCAG
ATGAGAAAAAGACTGCTGGGATTCTGGCCCGTCGGCGTGGACAGCGCCGGACAGTTGCAACTGGACGTGGTC
AGCTACGGCCAACGCCGAATCCTGGTGTCCCGCCGCCACGGCCAGGCCGCCTACCTCGGCGAGCGCATCGAG
CCGACACCCCTGCCCCAGGCCTGGACCGAAGCCGTCGGCACCTACCGCGTCGCCAGCACGAGCCGGCACAGC
TACCTGAACGGCCTGAGCATCAGGATCGAAGACGGCTTCCTGCTGGTGCGCGGGCAAGCCGGAGGAACCCGC
TCCGGCGAGTTCATCCTGCAACCCATCGACAGCGCACACGCCGTCCTGGCCGGCAGCGGCCAGGGCCTGGGA
GACACCTTCAGTCGCGACTTCGACGGTCTGAACGCGCTCGGCTACCGCTTCGCCCAGCAAGACACCAAGGCA
CGTCCCTGGCTGCAACGGAAGGAGTCCCCATGA
Translation:
MFRAMHLPLLGCLLGTSGCHGLPPAPPAPSAAVGNYGEVIDYLQRHIRREMERQDVPGLALALVDDQQLVWA
RGFGYADRQHRINASEHTAFHAGDLSKLLIASATLQLAERGQLSLDAPLQDTLREFYVRSRFHADQSEADRA
ITFRRLLSHQSGLPGEHLPPLFGERPNSLGQLPAKVSGVWLSNPPGTQVAHSNLGYELVGAAIERNTGKHFE
QHMREHLLEPLQMTRSSFARNALPQAQRAHGYSGGGRPGSASDLPVNDLWSSPVDLSRFVRMLFANGRHKER
QLLRKHSVEEMFRQQNAGNALDFDCQVGLAWFLSPCGSAPLEGGIRHYEYASATPGFSAHLVLLPEQRLAAI
VMSNADDRGSLTASLARQAASLMLQVRQGARRPAVQPTPARAPALKVPSPEDRRQLYGRYATRQGQVRLYER
RGRLYADFGEQRVELLRDTSGWLQMRKRLLGFWPVGVDSAGQLQLDVVSYGQRRILVSRRHGQAAYLGERIE
PTPLPQAWTEAVGTYRVASTSRHSYLNGLSIRIEDGFLLVRGQAGGTRSGEFILQPIDSAHAVLAGSGQGLG
DTFSRDFDGLNALGYRFAQQDTKARPWLQRKESP*
AnnotationID:473GeneID:464
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 13:01:35
Gene Name:
Confidence Code:3
GeneProduct:putative beta-lactamase
Cell Localization:()
Synonyms:PA1797
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00144,COG1680
Secondary Functional Category(ies):defense mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam00144, Beta-lactamase, Beta-lactamase. 
CD-Length = 324 residues,  99.4% aligned
Score =  179 bits (455), Expect = 8e-46
Identities = 97/345 (28%), Positives = 144/345 (41%), Gaps = 28/345 (8%)

COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins 
[Defense mechanisms]
CD-Length = 390 residues,  91.8% aligned
Score =  158 bits (401), Expect = 1e-39
Identities = 105/387 (27%), Positives = 150/387 (38%), Gaps = 25/387 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:931




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18073




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37080




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:464_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:464
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
800
                           PA1797_tr
                           translation of PA1797
                           610
                           98.19
                           99.01
                           0
                           3129.0
     

     
     
34192
                           gb|AAG05186.1|AE004605_8
                           (AE004605) hypothetical protein PA1797 [Pseudomonas aeruginosa PAO1]
                           610
                           98.19
                           99.01
                           0
                           3129.0
     

     






      

          
GC ORFID: 43466How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1797Glimmer Score: 

          
Start: 1269566Stop: 1267734

          
Length: 1833


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1797 translation of PA1797Homolog Bit Score 1209.0

          
Other Homologs:  t_PA1797 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCGCGCCATGCACCTTCCCCTTCTCGGCTGCCTGCTCGGCACCAGCGGCTGCCACGGCCTGCCACCC 
GCCCCGCCAGCGCCGAGCGCCGCCGTGGGCAACTACGGCGAGGTCATCGACTATCTGCAACGCCACATCCGC 
CGGGAAATGGAAAGGCAGGACGTGCCCGGCCTGGCCCTGGCATTGGTCGACGACCAGCAACTGGTCTGGGCT 
CGCGGTTTCGGCTATGCCGACCGACAGCACAGGATCAACGCCAGCGAGCACACCGCATTCCACGCCGGCGAC 
CTGTCCAAGCTACTGATCGCCAGCGCGACCCTGCAACTGGCCGAACGCGGCCAACTCTCTCTCGACGCTCCG 
CTCCAGGACACCTTGCGCGAGTTCTACGTACGCTCACGCTTCCATGCCGACCAGAGCGAGGCGGATCGCGCG 
ATCACTTTCCGCCGGCTGCTCAGCCATCAGTCCGGCCTTCCTGGCGAACACCTGCCGCCCCTGTTCGGCGAA 
CGCCCGAACTCACTCGGCCAACTGCCGGCGAAAGTATCCGGTGTCTGGCTGAGCAATCCGCCGGGAACCCAG 
GTCGCCCATTCCAACCTTGGCTACGAACTGGTCGGCGCGGCCATCGAGCGCAACACCGGAAAGCACTTCGAG 
CAGCACATGCGCGAGCACCTGCTGGAGCCTTTGCAGATGACCCGCTCCAGCTTCGCCAGGAACGCCCTGCCC 
CAGGCGCAACGCGCACACGGCTACAGCGGCGGCGGTCGCCCCGGCTCCGCCAGCGACCTCCCGGTCAACGAT 
CTGTGGAGCAGCCCGGTCGACCTCAGCCGCTTCGTCCGCATGCTGTTCGCCAACGGGCGCCACAAGGAGCGC 
CAGCTTCTCAGGAAACACTCCGTCGAGGAGATGTTCCGCCAGCAGAACGCCGGCAATGCCCTGGACTTCGAC 
TGCCAGGTGGGCCTGGCCTGGTTCCTCAGCCCGTGCGGCTCCGCGCCGCTGGAAGGGGGCATCCGTCACTAT 
GAGTACGCCAGCGCCACCCCAGGATTCAGCGCCCACCTGGTTCTGCTGCCGGAACAGCGCCTCGCCGCCATT 
GTCATGAGCAACGCCGATGACCGCGGTTCGCTCACCGCCTCCCTGGCCCGGCAAGCGGCGTCGCTCATGCTG 
CAGGTCAGGCAGGGCGCTCGTCGCCCCGCCGTACAGCCCACCCCCGCGCGCGCCCCCGCACTGAAGGTGCCG 
AGCCCGGAGGACCGGCGTCAGCTATACGGTCGTTACGCAACCCGCCAAGGCCAGGTTCGCCTGTACGAGCGC 
AGGGGTCGCCTGTACGCGGATTTCGGCGAACAACGCGTGGAATTGTTGCGCGACACCTCGGGCTGGCTGCAG 
ATGAGAAAAAGACTGCTGGGATTCTGGCCCGTCGGCGTGGACAGCGCCGGACAGTTGCAACTGGACGTGGTC 
AGCTACGGCCAACGCCGAATCCTGGTGTCCCGCCGCCACGGCCAGGCCGCCTACCTCGGCGAGCGCATCGAG 
CCGACACCCCTGCCCCAGGCCTGGACCGAAGCCGTCGGCACCTACCGCGTCGCCAGCACGAGCCGGCACAGC 
TACCTGAACGGCCTGAGCATCAGGATCGAAGACGGCTTCCTGCTGGTGCGCGGGCAAGCCGGAGGAACCCGC 
TCCGGCGAGTTCATCCTGCAACCCATCGACAGCGCACACGCCGTCCTGGCCGGCAGCGGCCAGGGCCTGGGA 
GACACCTTCAGTCGCGACTTCGACGGTCTGAACGCGCTCGGCTACCGCTTCGCCCAGCAAGACACCAAGGCA 
CGTCCCTGGCTGCAACGGAAGGAGTCCCCATGA