ViewGene
Locus Name:
GeneID:
Location:

GeneID:4638
TrivialName: PA14_47580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47580
PAO1 Ortholog Locus:PA1285
Sequence Length:450
Protein Length:149
Start: 4237866
Stop: 4237417
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04674.1|AE004558_3 (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 145/149 (97%), Positives = 146/149 (97%)
Sequence:
TTGACCGTCGAGAGGTACGGGTATATACACGCACCCATGCTACCGACCCAATGCCTCTGTACCAAACTGCGT
CGCGCCGCCCGCAGCGTTTCCCGCTTCTACGACGAGGCGCTGGCCGATACCGGCCTCAAGGTGGCGCAGTTT
TCCCTGCTGCGGCACCTGCAGCGCCTGGACCGGCCGAGCATTTCCGAACTCGCCGAAGCCATGGGACTCGAC
CGCAGCACCCTCGGTCGCAACCTGCGGGTGCTGGAAGGCGACGGCCTGCTGCGCCTGACCGGTGGCGAGGAC
CAGCGCAACCGCCTGGTCGAGCTGACGCCTGCCGGGCTGGATGCCCTGGAGCGCGGAACGCCGGCCTGGGAA
GACGCGCAGCGGCGTCTCGCCGGGCGCCTTGGCGAGGAGCGCAGCGGCGCCTTGGCGGCGTTGCTGGTGGAA
CTGGAGCGACTGGACTGA
Translation:
MTVERYGYIHAPMLPTQCLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLQRLDRPSISELAEAMGLD
RSTLGRNLRVLEGDGLLRLTGGEDQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRLGEERSGALAALLVE
LERLD*
AnnotationID:4644GeneID:4638
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 19:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MarR family
Cell Localization:()
Synonyms:PA1285
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00347,pfam01047
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67304.1|AE016356_12 (AE016780) transcriptional regulator, MarR family [Pseudomonas
           putida KT2440]
          Length = 134

 Score =  165 bits (418), Expect = 7e-41
 Identities = 88/133 (66%), Positives = 100/133 (75%)

>gb|AAN30478.1|AE014451_9 (AE014451) transcriptional regulator, MarR family [Brucella suis
           1330]
          Length = 136

 Score =  114 bits (284), Expect = 2e-25
 Identities = 61/133 (45%), Positives = 80/133 (60%)

>gb|AAL44009.1| (AE009249) transcriptional regulator, MarR family [Agrobacterium
           tumefaciens str. C58 (U. Washington)]
          Length = 133

 Score =  112 bits (280), Expect = 7e-25
 Identities = 58/129 (44%), Positives = 81/129 (62%)








 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.
CD-Length = 101 residues,  98.0% aligned
Score = 57.5 bits (139), Expect = 6e-10
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 1/99 (1%)

pfam01047, MarR, MarR family.
CD-Length = 104 residues, 100.0% aligned
Score = 53.7 bits (129), Expect = 9e-09
Identities = 41/104 (39%), Positives = 54/104 (51%), Gaps = 1/104 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:15142




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26418




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37505




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4638_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4638
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7006
                           PA1285_tr
                           translation of PA1285
                           149
                           97.31
                           97.98
                           0
                           724.0
     

     
     
185673
                           gb|AAG04674.1|AE004558_3
                           (AE004558) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           149
                           96.64
                           97.98
                           0
                           722.0
     

     
     
185674
                           gb|AAN67304.1|AE016356_12
                           (AE016780) transcriptional regulator, MarR family [Pseudomonas putida KT2440]
                           149
                           59.06
                           67.11
                           15
                           417.0
     

     
     
185675
                           gb|AAN30478.1|AE014451_9
                           (AE014451) transcriptional regulator, MarR family [Brucella suis 1330]
                           152
                           41.44
                           53.28
                           19
                           285.0
     

     
     
185676
                           gb|AAL44009.1|
                           (AE009249) transcriptional regulator, MarR family [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           149
                           39.59
                           55.03
                           16
                           279.0
     

     






      

          
GC ORFID: 47640How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1285Glimmer Score: 

          
Start: 716043Stop: 716492

          
Length: 450


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1285 translation of PA1285Homolog Bit Score 283.0

          
Other Homologs:  t_PA1285 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGACCGTCGAGAGGTACGGGTATATACACGCACCCATGCTACCGACCCAATGCCTCTGTACCAAACTGCGT 
CGCGCCGCCCGCAGCGTTTCCCGCTTCTACGACGAGGCGCTGGCCGATACCGGCCTCAAGGTGGCGCAGTTT 
TCCCTGCTGCGGCACCTGCAGCGCCTGGACCGGCCGAGCATTTCCGAACTCGCCGAAGCCATGGGACTCGAC 
CGCAGCACCCTCGGTCGCAACCTGCGGGTGCTGGAAGGCGACGGCCTGCTGCGCCTGACCGGTGGCGAGGAC 
CAGCGCAACCGCCTGGTCGAGCTGACGCCTGCCGGGCTGGATGCCCTGGAGCGCGGAACGCCGGCCTGGGAA 
GACGCGCAGCGGCGTCTCGCCGGGCGCCTTGGCGAGGAGCGCAGCGGCGCCTTGGCGGCGTTGCTGGTGGAA 
CTGGAGCGACTGGACTGA