ViewGene
Locus Name:
GeneID:
Location:

GeneID:4637
TrivialName: PA14_01490
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01490
PAO1 Ortholog Locus:PA0122
Sequence Length:411
Protein Length:136
Start: 139831
Stop: 140241
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03512.1|AE004450_7 (AE004450) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 135/136 (99%), Positives = 135/136 (99%)
Sequence:
ATGGCATACGCAGAATGGATCGCAGTGAAGGTCGTGGTATCCAAATCCATCGGCACGGTGGGCATCCGCAAC
GCCACCTTGCAATGGGGCAAGTTCTACCGCTACACCAACAAGGACGACGAGATTTCCACCGAGGAAGTCAGC
AGCATGAACGTGCAGGCCGGCAGCCCGCAATGGATCGCCTCCTGCGGACGGGAGAACGCTTCGTCCGGCACC
CAGGGCAGCTTCGACTGCTACGACGGCAACACCAAGATGGGCACCTTCAGCTGGGATGACCCGTGGAAATCC
GGCGCCACCAACACCTGGGGCTTCACGCCGGCATCGGCGGACTATGCCGGCATCACCAGCGGCGGCAACGCC
ACGGGCACGGATATCGGCGAGGTCACCCTGACCCTCGGCCGCTTCTCCTGA
Translation:
MAYAEWIAVKVVVSKSIGTVGIRNATLQWGKFYRYTNKDDEISTEEVSSMNVQAGSPQWIASCGRENASSGT
QGSFDCYDGNTKMGTFSWDDPWKSGATNTWGFTPASADYAGITSGGNATGTDIGEVTLTLGRFS*
AnnotationID:4643GeneID:4637
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:58
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin
Cell Localization:()
Synonyms:PA0122
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06355
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam06355, Aegerolysin, Aegerolysin.
CD-Length = 135 residues, 100.0% aligned
Score =  168 bits (427), Expect = 2e-43
Identities = 68/137 (49%), Positives = 91/137 (66%), Gaps = 3/137 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9275




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26416




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33447




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4637_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4637
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7005
                           PA0122_tr
                           translation of PA0122
                           136
                           99.26
                           99.26
                           0
                           726.0
     

     
     
185672
                           gb|AAG03512.1|AE004450_7
                           (AE004450) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           136
                           99.26
                           99.26
                           0
                           726.0
     

     






      

          
GC ORFID: 47639How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0122Glimmer Score: 

          
Start: 5941170Stop: 5941580

          
Length: 411


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0122 translation of PA0122Homolog Bit Score 284.0

          
Other Homologs:  t_PA0122 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCATACGCAGAATGGATCGCAGTGAAGGTCGTGGTATCCAAATCCATCGGCACGGTGGGCATCCGCAAC 
GCCACCTTGCAATGGGGCAAGTTCTACCGCTACACCAACAAGGACGACGAGATTTCCACCGAGGAAGTCAGC 
AGCATGAACGTGCAGGCCGGCAGCCCGCAATGGATCGCCTCCTGCGGACGGGAGAACGCTTCGTCCGGCACC 
CAGGGCAGCTTCGACTGCTACGACGGCAACACCAAGATGGGCACCTTCAGCTGGGATGACCCGTGGAAATCC 
GGCGCCACCAACACCTGGGGCTTCACGCCGGCATCGGCGGACTATGCCGGCATCACCAGCGGCGGCAACGCC 
ACGGGCACGGATATCGGCGAGGTCACCCTGACCCTCGGCCGCTTCTCCTGA