ViewGene
Locus Name:
GeneID:
Location:

GeneID:4636
TrivialName: PA14_09040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09040
PAO1 Ortholog Locus:PA4244
Sequence Length:435
Protein Length:144
Start: 767932
Stop: 768366
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07632.1|AE004841_10 (AE004841) 50S ribosomal protein L15 [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
ATGCAACTGAACGATCTGCGTTCCGCGCCGGGTGCCCGTCGCGAAAAGCACCGTCCGGGCCGTGGCATCGGT
AGCGGTCTGGGCAAGACTGGTGGCCGTGGTCACAAAGGTCTGACCTCCCGCTCCGGTGGCAAGGTCGCTCCG
GGCTTCGAGGGTGGTCAACAGCCTCTGCACCGTCGCCTGCCGAAGTTCGGCTTCGTTTCCCTGAAGGCCATG
GATCGTGCTGAAGTGCGCACCTCCGAGCTGGCCAAGGTCGAAGGCGACGTCGTCAGCCTGCAGACCCTGAAG
GATGCCAACCTGATCAACCAGCACGTACAGCGCGTCAAAGTCATGCTGTCCGGCGAAGTTGGTCGTGCGGTC
ACCCTGAAAGGTATCGCCGCCACCAAGGGTGCGCGTGCGGCTATCGAAGCAGCTGGCGGTAAATTCGAGGAC
TAA
Translation:
MQLNDLRSAPGARREKHRPGRGIGSGLGKTGGRGHKGLTSRSGGKVAPGFEGGQQPLHRRLPKFGFVSLKAM
DRAEVRTSELAKVEGDVVSLQTLKDANLINQHVQRVKVMLSGEVGRAVTLKGIAATKGARAAIEAAGGKFED
*
AnnotationID:4642GeneID:4636
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 13:01:51
Gene Name:rplO
Confidence Code:2
GeneProduct:50S ribosomal protein L15
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0200,pfam01305
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66103.1|AE016238_21 (AE016775) ribosomal protein L15 [Pseudomonas putida KT2440]
          Length = 144

 Score =  259 bits (663), Expect = 2e-69
 Identities = 127/144 (88%), Positives = 138/144 (95%)

>gb|AAO54187.1| (AE016858) ribosomal protein L15 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 144

 Score =  254 bits (649), Expect = 1e-67
 Identities = 125/144 (86%), Positives = 138/144 (95%)

>gb|AAM87553.1|AE014003_11 (AE014003) 50S ribosomal subunit protein L15 [Yersinia pestis KIM]
          Length = 144

 Score =  189 bits (479), Expect = 5e-48
 Identities = 99/144 (68%), Positives = 111/144 (77%)








 
Structural Features:
COG0200, RplO, Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]
CD-Length = 152 residues,  98.0% aligned
Score =  124 bits (313), Expect = 3e-30
Identities = 79/149 (53%), Positives = 105/149 (70%), Gaps = 6/149 (4%)

pfam01305, Ribosomal_L15, Ribosomal protein L15 amino terminal region.
CD-Length = 102 residues, 100.0% aligned
Score = 97.3 bits (242), Expect = 7e-22
Identities = 54/102 (52%), Positives = 71/102 (69%), Gaps = 1/102 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9273




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26414




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36530




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4636_cdd.html


    		




 
URL:

















    ReferenceID:36712




  
Author/Investigator(s):
        Koivula T, Hemila H.





  
Title:
        Nucleotide sequence of a Lactococcus lactis gene cluster encoding adenylate kinase, initiation factor 1 and ribosomal proteins.




  
PubMed:
        1783905


MedLine:
        




    
Source:
J Gen Microbiol. 1991 Nov;137 ( Pt 11):2595-600.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1783905

















    ReferenceID:36718




  
Author/Investigator(s):
        Cerretti DP, Dean D, Davis GR, Bedwell DM, Nomura M.





  
Title:
        The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene.




  
PubMed:
        6222285


MedLine:
        




    
Source:
Nucleic Acids Res. 1983 May 11;11(9):2599-616.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6222285

















    ReferenceID:36755




  
Author/Investigator(s):
        Giorginis S, Chen R.





  
Title:
        The primary structure of protein L15 located at the peptidyltransferase center of Escherichia coli ribosomes.




  
PubMed:
        340263


MedLine:
        




    
Source:
FEBS Lett. 1977 Dec 15;84(2):347-50.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=78084799&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4636
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7004
                           PA4244_tr
                           translation of PA4244
                           144
                           99.99
                           99.99
                           0
                           726.0
     

     
     
185579
                           gb|AAG07632.1|AE004841_10
                           (AE004841) 50S ribosomal protein L15 [Pseudomonas aeruginosa PAO1]
                           144
                           99.99
                           99.99
                           0
                           726.0
     

     
     
185580
                           gb|AAN66103.1|AE016238_21
                           (AE016775) ribosomal protein L15 [Pseudomonas putida KT2440]
                           144
                           88.19
                           95.83
                           0
                           663.0
     

     
     
185581
                           gb|AAO54187.1|
                           (AE016858) ribosomal protein L15 [Pseudomonas syringae pv. tomato str. DC3000]
                           144
                           86.80
                           95.83
                           0
                           649.0
     

     
     
185588
                           dbj|BAA03986.1|
                           (D16555) ribosomal protein L15 [Acyrthosiphon kondoi endosymbiont]
                           144
                           68.75
                           77.08
                           0
                           478.0
     

     






      

          
GC ORFID: 47638How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4244Glimmer Score: 

          
Start: 4186007Stop: 4185573

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4244 translation of PA4244Homolog Bit Score 284.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5206 (ORF: BLASTX 254.0), t_PA4244 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTGAACGATCTGCGTTCCGCGCCGGGTGCCCGTCGCGAAAAGCACCGTCCGGGCCGTGGCATCGGT 
AGCGGTCTGGGCAAGACTGGTGGCCGTGGTCACAAAGGTCTGACCTCCCGCTCCGGTGGCAAGGTCGCTCCG 
GGCTTCGAGGGTGGTCAACAGCCTCTGCACCGTCGCCTGCCGAAGTTCGGCTTCGTTTCCCTGAAGGCCATG 
GATCGTGCTGAAGTGCGCACCTCCGAGCTGGCCAAGGTCGAAGGCGACGTCGTCAGCCTGCAGACCCTGAAG 
GATGCCAACCTGATCAACCAGCACGTACAGCGCGTCAAAGTCATGCTGTCCGGCGAAGTTGGTCGTGCGGTC 
ACCCTGAAAGGTATCGCCGCCACCAAGGGTGCGCGTGCGGCTATCGAAGCAGCTGGCGGTAAATTCGAGGAC 
TAA