ViewGene
Locus Name:
GeneID:
Location:

GeneID:4634
TrivialName: PA14_30090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30090
PAO1 Ortholog Locus:PA2631
Sequence Length:426
Protein Length:141
Start: 2606618
Stop: 2606193
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06019.1|AE004691_10 (AE004691) probable acetyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGAATAAGATCCGCGTACGCGTAGCCGACTGGCAGAAGGACAATGCCGAGCTGCGCCGCATCCGCGAAGCG
GTCTTCATTGCCGAACAGTCGGTTCCGCCGGAACTGGAGTGGGACGCCGAAGACGACGAAGCCGTGCATTTT
CTCGCCTATGAAGGCGAATACGCGATCGGCACCGCGCGCCTGCTGGGCGACGGGCACATCGGCAGGGTCTCG
GTACTCAAGGACTGGCGCGGCCTGAAGGTCGGCGACGCGCTGATGCGCGCGGCCATCGAGGAAGCCGAGCGA
CGCGGCCTGAAGCGCCAACTGCTGACCGCGCAGGTCTACGCCATTCCCTTCTACGAGCGACTGGGCTTCAAG
GTCGATAGCGGCGAATTCCTCGATGCCGGCCTGCCCCATGTCGACATGGTTCGCGACAGCGACTGA
Translation:
MNKIRVRVADWQKDNAELRRIREAVFIAEQSVPPELEWDAEDDEAVHFLAYEGEYAIGTARLLGDGHIGRVS
VLKDWRGLKVGDALMRAAIEEAERRGLKRQLLTAQVYAIPFYERLGFKVDSGEFLDAGLPHVDMVRDSD*
AnnotationID:4640GeneID:4634
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 14:02:16
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:PA2631
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2153
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69612.1|AE016594_9 (AE016789) acetyltransferase, GNAT family [Pseudomonas putida
           KT2440]
          Length = 142

 Score =  218 bits (555), Expect = 4e-57
 Identities = 104/140 (74%), Positives = 124/140 (88%)

>gb|AAO56840.1| (AE016868) acetyltransferase, GNAT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 143

 Score =  209 bits (532), Expect = 2e-54
 Identities = 102/140 (72%), Positives = 120/140 (85%)








 
Structural Features:
COG2153, ElaA, Predicted acyltransferase
CD-Length = 155 residues,  86.5% aligned
Score = 90.3 bits (224), Expect = 8e-20
Identities = 47/134 (35%), Positives = 65/134 (48%), Gaps = 9/134 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9269




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26410




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33214




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4634_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4634
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7002
                           PA2631_tr
                           translation of PA2631
                           141
                           99.99
                           99.99
                           0
                           726.0
     

     
     
185567
                           gb|AAG06019.1|AE004691_10
                           (AE004691) probable acetyl transferase [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           726.0
     

     
     
185568
                           gb|AAN69612.1|AE016594_9
                           (AE016789) acetyltransferase, GNAT family [Pseudomonas putida KT2440]
                           142
                           73.23
                           87.32
                           1
                           553.0
     

     
     
185569
                           gb|AAO56840.1|
                           (AE016868) acetyltransferase, GNAT family [Pseudomonas syringae pv. tomato str. DC3000]
                           143
                           71.32
                           83.91
                           2
                           531.0
     

     
     
185576
                           emb|CAB51981.1|
                           (AL939111) hypothetical protein [Streptomyces coelicolor A3(2)]
                           161
                           41.61
                           52.79
                           21
                           253.0
     

     






      

          
GC ORFID: 47636How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2631Glimmer Score: 

          
Start: 2347308Stop: 2347733

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2631 translation of PA2631Homolog Bit Score 284.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2760 (ORF: BLASTX 211.0), t_PA2631 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATAAGATCCGCGTACGCGTAGCCGACTGGCAGAAGGACAATGCCGAGCTGCGCCGCATCCGCGAAGCG 
GTCTTCATTGCCGAACAGTCGGTTCCGCCGGAACTGGAGTGGGACGCCGAAGACGACGAAGCCGTGCATTTT 
CTCGCCTATGAAGGCGAATACGCGATCGGCACCGCGCGCCTGCTGGGCGACGGGCACATCGGCAGGGTCTCG 
GTACTCAAGGACTGGCGCGGCCTGAAGGTCGGCGACGCGCTGATGCGCGCGGCCATCGAGGAAGCCGAGCGA 
CGCGGCCTGAAGCGCCAACTGCTGACCGCGCAGGTCTACGCCATTCCCTTCTACGAGCGACTGGGCTTCAAG 
GTCGATAGCGGCGAATTCCTCGATGCCGGCCTGCCCCATGTCGACATGGTTCGCGACAGCGACTGA