ViewGene
Locus Name:
GeneID:
Location:

GeneID:4632
TrivialName: PA14_50470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50470
PAO1 Ortholog Locus:PA1078
Sequence Length:441
Protein Length:146
Start: 4485239
Stop: 4484799
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04467.1|AE004539_9 (AE004539) flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PAO1]
Identities = 146/146 (100%), Positives = 146/146 (100%)
Sequence:
ATGTCCCTCGCCAGTGTCTTCAACATTGCCGGTAGCGGCATGAGCGCCCAGAGCACCCGCCTGAACACCGTG
GCCAGCAACATCGCCAACGCCGAGACGGTTTCCTCCAGCGTCGACAAGACCTACCGCGCCCGCCATCCGGTG
TTCTCCACCATGTTCCAGCAGGCCCAGGGCGACAGCGGCTCGCTGTTCGCCGACCAGGACAGCTCCGGCGCC
GGCGTGCAGGTGCTGGGCATCGTCGAGGACCAGAGTTCGCTGATGCCGCGCTACGAGCCGAACCATCCGGCC
GCGGATGCCAACGGCTACGTGTATTACCCCAATGTGAACGTGGTCGAGGAAATGGCCGACATGATTTCCGCC
AGCCGTGCCTTCCAGACCAACGCGGAAATGATGAATACCGCCAAACAGATGATGCAGAAGGTCCTGACCCTG
GGTCAGTGA
Translation:
MSLASVFNIAGSGMSAQSTRLNTVASNIANAETVSSSVDKTYRARHPVFSTMFQQAQGDSGSLFADQDSSGA
GVQVLGIVEDQSSLMPRYEPNHPAADANGYVYYPNVNVVEEMADMISASRAFQTNAEMMNTAKQMMQKVLTL
GQ*
AnnotationID:4638GeneID:4632
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 15:03:09
Gene Name:flgC
Confidence Code:2
GeneProduct:flagellar basal-body rod protein FlgC
Cell Localization:()
Synonyms:PA1078
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1558
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG1558, FlgC, Flagellar basal body rod protein [Cell motility and secretion]
             CD-Length = 137 residues, 100.0% aligned
             Score =  171 bits (436), Expect = 2e-44






   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:9265




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26406




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4632
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7000
                           PA1078_tr
                           translation of PA1078
                           146
                           99.99
                           99.99
                           0
                           727.0
     

     
     
185521
                           gb|AAG04467.1|AE004539_9
                           (AE004539) flagellar basal-body rod protein FlgC [Pseudomonas aeruginosa PAO1]
                           146
                           99.99
                           99.99
                           0
                           727.0
     

     
     
185522
                           gb|AAN69968.1|AE016635_4
                           (AE016790) flagellar basal-body rod protein FlgC [Pseudomonas putida KT2440]
                           147
                           83.67
                           90.47
                           1
                           607.0
     

     
     
185523
                           gb|AAO55452.1|
                           (AE016862) flagellar basal-body rod protein FlgC [Pseudomonas syringae pv. tomato str. DC3000]
                           146
                           78.76
                           87.67
                           0
                           582.0
     

     
     
185526
                           gb|AAQ60555.1|
                           (AE016920) flagellar basal-body rod protein flgC [Chromobacterium violaceum ATCC 12472]
                           146
                           55.47
                           69.17
                           10
                           386.0
     

     






      

          
GC ORFID: 47634How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1078Glimmer Score: 

          
Start: 468669Stop: 469109

          
Length: 441


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1078 translation of PA1078Homolog Bit Score 284.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7891 (ORF: BLASTX 228.0), t_PA1078 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCTCGCCAGTGTCTTCAACATTGCCGGTAGCGGCATGAGCGCCCAGAGCACCCGCCTGAACACCGTG 
GCCAGCAACATCGCCAACGCCGAGACGGTTTCCTCCAGCGTCGACAAGACCTACCGCGCCCGCCATCCGGTG 
TTCTCCACCATGTTCCAGCAGGCCCAGGGCGACAGCGGCTCGCTGTTCGCCGACCAGGACAGCTCCGGCGCC 
GGCGTGCAGGTGCTGGGCATCGTCGAGGACCAGAGTTCGCTGATGCCGCGCTACGAGCCGAACCATCCGGCC 
GCGGATGCCAACGGCTACGTGTATTACCCCAATGTGAACGTGGTCGAGGAAATGGCCGACATGATTTCCGCC 
AGCCGTGCCTTCCAGACCAACGCGGAAATGATGAATACCGCCAAACAGATGATGCAGAAGGTCCTGACCCTG 
GGTCAGTGA