ViewGene
Locus Name:
GeneID:
Location:

GeneID:4631
TrivialName: PA14_66970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66970
PAO1 Ortholog Locus:PA5069
Sequence Length:426
Protein Length:141
Start: 5978198
Stop: 5978623
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08454.1|AE004920_4 (AE004920) translocation protein TatB [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGTTCGGAATCAGCTTCAGCGAACTGTTGCTGGTCGGGCTGGTCGCCCTGCTGGTGCTCGGCCCCGAGCGC
CTGCCGGGCGCCGCACGTACCGCCGGCCTGTGGATCGGCCGCCTGAAGCGCAGTTTCAATACCATCAAGCAG
GAAGTGGAACGGGAAATCGGTGCGGACGAGATCCGCCGGCAACTGCACAACGAGCACATCCTCTCGATGGAG
CGCGAAGCGCAGAAGCTGCTGGCCCCGCTGACCGGCCAGAATCCCCCGCAGGAAACCCCGCCGCCGGCGGCC
GAGAGCCCGGCGCCGAGCGTACCCACGCCGCCGCCGACCAGCACGCCTGCGGTTCCGCCCGCGGACGCCGCG
GCACCGCCGGCAGTCGCTGCCTCCACTCCCCCTTCGCCACCGTCCGAGACGCCGCGTAATCCATGA
Translation:
MFGISFSELLLVGLVALLVLGPERLPGAARTAGLWIGRLKRSFNTIKQEVEREIGADEIRRQLHNEHILSME
REAQKLLAPLTGQNPPQETPPPAAESPAPSVPTPPPTSTPAVPPADAAAPPAVAASTPPSPPSETPRNP*
AnnotationID:4637GeneID:4631
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 05:05:14
Gene Name:tatB
Confidence Code:2
GeneProduct:Sec-independent protein translocase TatB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1826
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70582.1|AE016701_2 (AE016792) Sec-independent protein translocase TatB [Pseudomonas
           putida KT2440]
          Length = 125

 Score =  164 bits (416), Expect = 6e-41
 Identities = 91/143 (63%), Positives = 101/143 (70%), Gaps = 20/143 (13%)

>gb|AAO58582.1| (AE016874) sec-independent protein translocase TatB [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 153

 Score =  163 bits (413), Expect = 1e-40
 Identities = 95/153 (62%), Positives = 105/153 (68%), Gaps = 16/153 (10%)








 
Structural Features:
COG1826, TatA, Sec-independent protein secretion pathway components 
[Intracellular trafficking and secretion]
CD-Length = 94 residues, 100.0% aligned
Score = 73.8 bits (181), Expect = 6e-15
Identities = 29/101 (28%), Positives = 47/101 (46%), Gaps = 7/101 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9263




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26404




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35030




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4631_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4631
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6999
                           PA5069_tr
                           translation of PA5069
                           141
                           99.99
                           99.99
                           0
                           728.0
     

     
     
185516
                           gb|AAG08454.1|AE004920_4
                           (AE004920) translocation protein TatB [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           728.0
     

     
     
185517
                           gb|AAN70582.1|AE016701_2
                           (AE016792) Sec-independent protein translocase TatB [Pseudomonas putida KT2440]
                           143
                           63.63
                           70.62
                           20
                           430.0
     

     
     
185518
                           gb|AAO58582.1|
                           (AE016874) sec-independent protein translocase TatB [Pseudomonas syringae pv. tomato str. DC3000]
                           157
                           62.42
                           68.15
                           20
                           429.0
     

     
     
185520
                           emb|CAC29148.1|
                           (AJ299712) TatB protein [Pseudomonas stutzeri]
                           153
                           54.24
                           60.78
                           26
                           358.0
     

     






      

          
GC ORFID: 47633How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5069Glimmer Score: 

          
Start: 5241882Stop: 5242307

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5069 translation of PA5069Homolog Bit Score 285.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3800 (ORF: BLASTX 168.0), t_PA5069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGGAATCAGCTTCAGCGAACTGTTGCTGGTCGGGCTGGTCGCCCTGCTGGTGCTCGGCCCCGAGCGC 
CTGCCGGGCGCCGCACGTACCGCCGGCCTGTGGATCGGCCGCCTGAAGCGCAGTTTCAATACCATCAAGCAG 
GAAGTGGAACGGGAAATCGGTGCGGACGAGATCCGCCGGCAACTGCACAACGAGCACATCCTCTCGATGGAG 
CGCGAAGCGCAGAAGCTGCTGGCCCCGCTGACCGGCCAGAATCCCCCGCAGGAAACCCCGCCGCCGGCGGCC 
GAGAGCCCGGCGCCGAGCGTACCCACGCCGCCGCCGACCAGCACGCCTGCGGTTCCGCCCGCGGACGCCGCG 
GCACCGCCGGCAGTCGCTGCCTCCACTCCCCCTTCGCCACCGTCCGAGACGCCGCGTAATCCATGA