ViewGene

Locus Name:
GeneID:
Location:

GeneID:4630
TrivialName: PA14_58040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58040
PAO1 Ortholog Locus:PA4471
Sequence Length:396
Protein Length:131
Start: 5163895
Stop: 5163500
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07859.1|AE004860_15 (AE004860) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/131 (100%), Positives = 131/131 (100%)
Sequence:
ATGTCCTTCGAGGCGCACGACCCGCAAGCATTGGATCACTGGTACTGGCTGGGCACGCAGATCCGCTGCGCG
CTCGATCCCGACGAACCGCGCCTGCTCGACCAGTACCTCGGCGAGGCGCGCTATCTCGCCGGTTGGGAAGGT
GTGGCCGCCTGGCCGCTGTTCGAGAAAGCCTACAACCTCCTGCTCGATACCGGTCGCGATCCGATATTGCCC
TGGCACTGGCGCAGCCTCTGCCTCGACTACGCCTACCGGCCCCTCTGCGAACTTCAGCGACTGACCACCAAC
GGCAGCCAGCGGCGACGGCTGCGCCAGCTCTCCGTACGAATGGCCAGGCAGGACCTGGCGCCGTCGATGAGC
TTCGATCACCCGCAACAAGGAAACCAAGATGACTGA
Translation:
MSFEAHDPQALDHWYWLGTQIRCALDPDEPRLLDQYLGEARYLAGWEGVAAWPLFEKAYNLLLDTGRDPILP
WHWRSLCLDYAYRPLCELQRLTTNGSQRRRLRQLSVRMARQDLAPSMSFDHPQQGNQDD*
AnnotationID:4636GeneID:4630
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 08:08:24
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4471
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAB02829.1| (U59458) FagA [Pseudomonas aeruginosa]
          Length = 131

 Score =  285 bits (729), Expect = 3e-77
 Identities = 131/131 (100%), Positives = 131/131 (100%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:9261
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26402
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4630

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6998 PA4471_tr translation of PA4471 131 99.99 99.99 0 729.0
185512 gb|AAG07859.1|AE004860_15 (AE004860) hypothetical protein PA4471 [Pseudomonas aeruginosa PAO1] 131 99.99 99.99 0 729.0
185513 gb|AAB02829.1| (U59458) FagA [Pseudomonas aeruginosa] 131 99.99 99.99 0 729.0
185514 gb|AAN66568.1|AE016285_6 (AE016777) fagA protein [Pseudomonas putida KT2440] 131 44.27 60.30 1 291.0
185515 gb|AAO57911.1| (AE016872) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 131 41.98 58.77 0 281.0
GC ORFID: 47632How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4471Glimmer Score:
Start: 4427574Stop: 4427179
Length: 396
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4471 translation of PA4471Homolog Bit Score 285.0
Other Homologs: t_PA4471 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCTTCGAGGCGCACGACCCGCAAGCATTGGATCACTGGTACTGGCTGGGCACGCAGATCCGCTGCGCG
CTCGATCCCGACGAACCGCGCCTGCTCGACCAGTACCTCGGCGAGGCGCGCTATCTCGCCGGTTGGGAAGGT
GTGGCCGCCTGGCCGCTGTTCGAGAAAGCCTACAACCTCCTGCTCGATACCGGTCGCGATCCGATATTGCCC
TGGCACTGGCGCAGCCTCTGCCTCGACTACGCCTACCGGCCCCTCTGCGAACTTCAGCGACTGACCACCAAC
GGCAGCCAGCGGCGACGGCTGCGCCAGCTCTCCGTACGAATGGCCAGGCAGGACCTGGCGCCGTCGATGAGC
TTCGATCACCCGCAACAAGGAAACCAAGATGACTGA