ViewGene
Locus Name:
GeneID:
Location:

GeneID:463
TrivialName: PA14_10370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10370
PAO1 Ortholog Locus:PA4140
Sequence Length:1794
Protein Length:597
Start: 897481
Stop: 895688
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07527.1|AE004830_8 (AE004830) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 589/597 (98%), Positives = 591/597 (98%)
Sequence:
ATGCACGACCCCATCCAGCAAGCCGACGCCTTCGTCGACGATCCCGACCAGGAGTCCGGCGGTCTGTCGCGC
CGCAGCTTCCTCGGCAAGAGTGCCACGCTCGGCGCGGTCGGCCTGGTGGCCGGCTGGACCCCGGCCTTCGTC
ATCCAGCCCGCCGAAGCCGCCGCCAGCAGCTGTCCGGCGCCGGCAGGCTTTCCGGCCGGCCTCGAACTTTAT
CGGCGGGCGTTCCGCAACTGGTCGGGGGAAATCGCCGCCGACGACCTCTGGAGCTGCGCCCCGCGCACCAAC
GAAGAGGTTCTCGCGGTGGTCAACTGGGCCTGGCAGAACGGCTTCAAGGTGCGCCCGCGCGGCATGGGTCAC
AACTGGTCCCCGCTGCTGCTGAAAGGCGGCGAGAACTGCGAGAGCCGCATCATGCTGGTGGAAACCAGCCGT
TACCTGACCCGCGTACGGATCGACGCCCAGGGCGAGTTCGGCCTGTTCAGCGCGCAGACCGGCGTCACCATG
GAAGCCCTGCTGAAACAGCTGGAGCGGGTCAAGCTCGGCTTCGTCGCCACGCCGGCGCCGGGCGACCTGACC
CTCGGCGGGGTGCTCGCCATCGACGGCCACGGCACCGGCATCCCGGCGCAGGGCGAAAGCCGCCTGCCGGGG
CAGAGCTACGGCTCCCTGAGCAACAGCATCGTGGCGCTGACCGCGGTGGTCTGGGACGGCGCCGCCGGACAA
TACGTGCTGAAGACCTTCCGCCGCGACGATCCGGCCTGCGCGCCGTTCCTCGTCCACCTCGGACGCGCCTTC
ATCGTCGAGGCGACCCTCCAGGCCGGGGTCAACAAGCGCATGCGCTGCCAGAGCTACGTGAACATCCCGGCG
AGCGAGATGTTCGCCGCGGCCGGCAGCGGCGGAAGGACCTTCGACAGCTTCCTGCAAAAGAGCGGACGCGCC
GAGGCCATCTGGTTCCCCTTCACCGACAAGCCCTGGCTGAAGGTCTGGACGCCGACCCCGCGCTGCCCGTTC
GGTGCCCGCGCGGTCAACGGCCCGTTCAACTACCCCTTCTCCGACAACATTCCCAAGGCGCTGTCCGACCTG
CTGGCGGCGATCAATACCGGCCACCCGGAACTCACCCCGCTGCTCGGCAAGCTGCAGTACGACCTGGTAGTG
GGCGGCATGGCGCTGACCCTGGGCTACGACCTTTGGGGCTGGAGCAAGGACCTGCTGCTGTACATCAAGCCC
AGCACCCTGCGCGTCACCGCCAACGGCTACGCGGTGCTGACCCGGCGTCGCGACGTGCAGCGGGTGATCAAC
GAGTTCTACCTGCAGTACCAGACGATGGTCGCCGCCTACCGCGCCAACGGCCACTACCCCATGAACGGCCCG
GTGGAGATTCGCGTCAGCGGGCTCGACCAGCCCGGCGAGTCGATCGTTCCCGGCGCCCAGGTGCCCAGTCTG
TCGGCGATCCGTCCGCGCCCCGACCAGCCGGAATGGGACACGGCGATCTGGCTGGACATCCTCAGCCTGCCC
GGCACTCCGCAGGCCAACGCCTTCTACCACGAGTTCGAGGCCTGGCTGTTCGACCACTTCAGCGGCGACTAC
GCCTCGCTGCGGGTGGAGTGGAGCAAGGGCTGGGGCTACAGCCCCACCGCCGCCTGGGCCGAGCCGACGGTG
GTCGACCAGTTGGTGGCGCAGTCGCTACGCCAAGGCCTGGTCGCAGACAACGATTGGGACGCCGCGGCGCGC
CAGTTGAACGAAGCCGATCCGCATCGGCTGTTCAGCTCGCCGCTGCTCGACCGGCTGATGCCATGA
Translation:
MHDPIQQADAFVDDPDQESGGLSRRSFLGKSATLGAVGLVAGWTPAFVIQPAEAAASSCPAPAGFPAGLELY
RRAFRNWSGEIAADDLWSCAPRTNEEVLAVVNWAWQNGFKVRPRGMGHNWSPLLLKGGENCESRIMLVETSR
YLTRVRIDAQGEFGLFSAQTGVTMEALLKQLERVKLGFVATPAPGDLTLGGVLAIDGHGTGIPAQGESRLPG
QSYGSLSNSIVALTAVVWDGAAGQYVLKTFRRDDPACAPFLVHLGRAFIVEATLQAGVNKRMRCQSYVNIPA
SEMFAAAGSGGRTFDSFLQKSGRAEAIWFPFTDKPWLKVWTPTPRCPFGARAVNGPFNYPFSDNIPKALSDL
LAAINTGHPELTPLLGKLQYDLVVGGMALTLGYDLWGWSKDLLLYIKPSTLRVTANGYAVLTRRRDVQRVIN
EFYLQYQTMVAAYRANGHYPMNGPVEIRVSGLDQPGESIVPGAQVPSLSAIRPRPDQPEWDTAIWLDILSLP
GTPQANAFYHEFEAWLFDHFSGDYASLRVEWSKGWGYSPTAAWAEPTVVDQLVAQSLRQGLVADNDWDAAAR
QLNEADPHRLFSSPLLDRLMP*
AnnotationID:472GeneID:463
AnnotatorUID: diggins
Modification Date/Time: 2005-06-07 11:11:47
Gene Name:
Confidence Code:3
GeneProduct:putative cholesterol oxidase
Cell Localization:()
Synonyms:choS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:putative dehydrogenase
Functional Category Confidence Code:5
COGs:pfam01565
Secondary Functional Category(ies):putative enzyme
EC Number:1.1.3.6
Status:ACTIVE
Pathway:
Bile acid biosynthesis
Homology:
>dbj|BAB63263.1| (AB051407) cholesterol oxidase [Burkholderia cepacia]
          Length = 582

 Score =  683 bits (1763), Expect = 0.0
 Identities = 329/576 (57%), Positives = 418/576 (72%), Gaps = 5/576 (0%)
Structural Features:
pfam01565, FAD_binding_4, FAD binding domain
CD-Length = 158 residues,  94.3% aligned
Score = 76.1 bits (187), Expect = 1e-14
Identities = 42/171 (24%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Genomic Context:






   
Comment:


















    ReferenceID:929




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18071




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36864




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:463_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:463
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
799
                           PA4140_tr
                           translation of PA4140
                           597
                           98.65
                           98.99
                           0
                           3131.0
     

     
     
34190
                           gb|AAG07527.1|AE004830_8
                           (AE004830) hypothetical protein PA4140 [Pseudomonas aeruginosa PAO1]
                           597
                           98.65
                           98.99
                           0
                           3131.0
     

     
     
34191
                           dbj|BAB63263.1|
                           (AB051407) cholesterol oxidase [Burkholderia cepacia]
                           598
                           55.51
                           70.73
                           17
                           1776.0
     

     






      

          
GC ORFID: 43465How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4140Glimmer Score: 

          
Start: 4056456Stop: 4058249

          
Length: 1794


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4140 translation of PA4140Homolog Bit Score 1210.0

          
Other Homologs:  t_PA4140 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCACGACCCCATCCAGCAAGCCGACGCCTTCGTCGACGATCCCGACCAGGAGTCCGGCGGTCTGTCGCGC 
CGCAGCTTCCTCGGCAAGAGTGCCACGCTCGGCGCGGTCGGCCTGGTGGCCGGCTGGACCCCGGCCTTCGTC 
ATCCAGCCCGCCGAAGCCGCCGCCAGCAGCTGTCCGGCGCCGGCAGGCTTTCCGGCCGGCCTCGAACTTTAT 
CGGCGGGCGTTCCGCAACTGGTCGGGGGAAATCGCCGCCGACGACCTCTGGAGCTGCGCCCCGCGCACCAAC 
GAAGAGGTTCTCGCGGTGGTCAACTGGGCCTGGCAGAACGGCTTCAAGGTGCGCCCGCGCGGCATGGGTCAC 
AACTGGTCCCCGCTGCTGCTGAAAGGCGGCGAGAACTGCGAGAGCCGCATCATGCTGGTGGAAACCAGCCGT 
TACCTGACCCGCGTACGGATCGACGCCCAGGGCGAGTTCGGCCTGTTCAGCGCGCAGACCGGCGTCACCATG 
GAAGCCCTGCTGAAACAGCTGGAGCGGGTCAAGCTCGGCTTCGTCGCCACGCCGGCGCCGGGCGACCTGACC 
CTCGGCGGGGTGCTCGCCATCGACGGCCACGGCACCGGCATCCCGGCGCAGGGCGAAAGCCGCCTGCCGGGG 
CAGAGCTACGGCTCCCTGAGCAACAGCATCGTGGCGCTGACCGCGGTGGTCTGGGACGGCGCCGCCGGACAA 
TACGTGCTGAAGACCTTCCGCCGCGACGATCCGGCCTGCGCGCCGTTCCTCGTCCACCTCGGACGCGCCTTC 
ATCGTCGAGGCGACCCTCCAGGCCGGGGTCAACAAGCGCATGCGCTGCCAGAGCTACGTGAACATCCCGGCG 
AGCGAGATGTTCGCCGCGGCCGGCAGCGGCGGAAGGACCTTCGACAGCTTCCTGCAAAAGAGCGGACGCGCC 
GAGGCCATCTGGTTCCCCTTCACCGACAAGCCCTGGCTGAAGGTCTGGACGCCGACCCCGCGCTGCCCGTTC 
GGTGCCCGCGCGGTCAACGGCCCGTTCAACTACCCCTTCTCCGACAACATTCCCAAGGCGCTGTCCGACCTG 
CTGGCGGCGATCAATACCGGCCACCCGGAACTCACCCCGCTGCTCGGCAAGCTGCAGTACGACCTGGTAGTG 
GGCGGCATGGCGCTGACCCTGGGCTACGACCTTTGGGGCTGGAGCAAGGACCTGCTGCTGTACATCAAGCCC 
AGCACCCTGCGCGTCACCGCCAACGGCTACGCGGTGCTGACCCGGCGTCGCGACGTGCAGCGGGTGATCAAC 
GAGTTCTACCTGCAGTACCAGACGATGGTCGCCGCCTACCGCGCCAACGGCCACTACCCCATGAACGGCCCG 
GTGGAGATTCGCGTCAGCGGGCTCGACCAGCCCGGCGAGTCGATCGTTCCCGGCGCCCAGGTGCCCAGTCTG 
TCGGCGATCCGTCCGCGCCCCGACCAGCCGGAATGGGACACGGCGATCTGGCTGGACATCCTCAGCCTGCCC 
GGCACTCCGCAGGCCAACGCCTTCTACCACGAGTTCGAGGCCTGGCTGTTCGACCACTTCAGCGGCGACTAC 
GCCTCGCTGCGGGTGGAGTGGAGCAAGGGCTGGGGCTACAGCCCCACCGCCGCCTGGGCCGAGCCGACGGTG 
GTCGACCAGTTGGTGGCGCAGTCGCTACGCCAAGGCCTGGTCGCAGACAACGATTGGGACGCCGCGGCGCGC 
CAGTTGAACGAAGCCGATCCGCATCGGCTGTTCAGCTCGCCGCTGCTCGACCGGCTGATGCCATGA