ViewGene
Locus Name:
GeneID:
Location:

GeneID:4629
TrivialName: PA14_30770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30770
PAO1 Ortholog Locus:PA2577
Sequence Length:438
Protein Length:145
Start: 2669787
Stop: 2669350
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05965.1|AE004686_3 (AE004686) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 144/145 (99%), Positives = 145/145 (100%)
Sequence:
ATGACCGACGACATCGACCAACGCCTGATCAACGCCCTCATGGCTGACTCGCGACTGTCCCTCAAGGCCCTC
GCCCAGGTCAGCGGACTATCGGCCCCGAGCGTCGCCGAACGCCTGCGCAAACTGGAAGAACGCGGCGTGATC
CGCGGCTACACCCTGGATGTCGACCCCCGCTGTTTCGGCTACCAGTTCCAGGCGATCGTGCGCATCCGCCCC
CTGCCTGGCAAGCTGCACGAGGTCGAGCGACAGATCCAGGACATCGCCGAGTTCACCGAGTGCGACAAGGTC
ACCGGTGACGACTGCTTCATCGCCCGCCTCCAGGTCCGTTCGATGGAACAGCTCGACACGCTGCTGGACAGG
ATCAACGGCTACGCGGAAACCAACACCGCCATCGTCAAGAAGTCCCCGGTTAAACGCCGGCTCCCCCCGATG
ACCTGA
Translation:
MTDDIDQRLINALMADSRLSLKALAQVSGLSAPSVAERLRKLEERGVIRGYTLDVDPRCFGYQFQAIVRIRP
LPGKLHEVERQIQDIAEFTECDKVTGDDCFIARLQVRSMEQLDTLLDRINGYAETNTAIVKKSPVKRRLPPM
T*
AnnotationID:4635GeneID:4629
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AsnC family
Cell Localization:()
Synonyms:PA2577
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1522,smart00344,pfam01037
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69888.1|AE016628_1 (AE016790) transcriptional regulator, AsnC family [Pseudomonas
           putida KT2440]
          Length = 145

 Score =  233 bits (595), Expect = 2e-61
 Identities = 119/144 (82%), Positives = 129/144 (89%)

>emb|CAC41781.1| (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium
           meliloti]
          Length = 145

 Score =  192 bits (487), Expect = 6e-49
 Identities = 94/144 (65%), Positives = 117/144 (81%)

>dbj|BAB50701.1| (AP003003) transcriptional regulator [Mesorhizobium loti]
          Length = 152

 Score =  186 bits (473), Expect = 3e-47
 Identities = 91/144 (63%), Positives = 115/144 (79%)








 
Structural Features:
COG1522, Lrp, Transcriptional regulators [Transcription]
CD-Length = 154 residues,  97.4% aligned
Score =  107 bits (267), Expect = 7e-25
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 6/150 (4%)

smart00344, HTH_ASNC, helix_turn_helix ASNC type
CD-Length = 104 residues,  99.0% aligned
Score = 91.7 bits (228), Expect = 3e-20
Identities = 38/103 (36%), Positives = 60/103 (58%), Gaps = 1/103 (0%)

pfam01037, AsnC_trans_reg, AsnC family.
CD-Length = 104 residues,  92.3% aligned
Score = 78.7 bits (194), Expect = 2e-16
Identities = 33/96 (34%), Positives = 51/96 (53%), Gaps = 3/96 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9259




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26400




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33144




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4629_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4629
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6997
                           PA2577_tr
                           translation of PA2577
                           145
                           99.31
                           99.99
                           0
                           729.0
     

     
     
185504
                           gb|AAG05965.1|AE004686_3
                           (AE004686) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           145
                           99.31
                           99.99
                           0
                           729.0
     

     
     
185505
                           gb|AAN69888.1|AE016628_1
                           (AE016790) transcriptional regulator, AsnC family [Pseudomonas putida KT2440]
                           145
                           82.06
                           88.96
                           0
                           594.0
     

     
     
185506
                           emb|CAC41781.1|
                           (AL591783) PUTATIVE TRANSCRIPTION REGULATOR PROTEIN [Sinorhizobium meliloti]
                           145
                           64.82
                           80.68
                           0
                           486.0
     

     
     
185507
                           dbj|BAB50701.1|
                           (AP003003) transcriptional regulator [Mesorhizobium loti]
                           152
                           59.86
                           75.65
                           7
                           473.0
     

     






      

          
GC ORFID: 47631How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2577Glimmer Score: 

          
Start: 2284139Stop: 2284576

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2577 translation of PA2577Homolog Bit Score 285.0

          
Other Homologs:  t_PA2577 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACGACATCGACCAACGCCTGATCAACGCCCTCATGGCTGACTCGCGACTGTCCCTCAAGGCCCTC 
GCCCAGGTCAGCGGACTATCGGCCCCGAGCGTCGCCGAACGCCTGCGCAAACTGGAAGAACGCGGCGTGATC 
CGCGGCTACACCCTGGATGTCGACCCCCGCTGTTTCGGCTACCAGTTCCAGGCGATCGTGCGCATCCGCCCC 
CTGCCTGGCAAGCTGCACGAGGTCGAGCGACAGATCCAGGACATCGCCGAGTTCACCGAGTGCGACAAGGTC 
ACCGGTGACGACTGCTTCATCGCCCGCCTCCAGGTCCGTTCGATGGAACAGCTCGACACGCTGCTGGACAGG 
ATCAACGGCTACGCGGAAACCAACACCGCCATCGTCAAGAAGTCCCCGGTTAAACGCCGGCTCCCCCCGATG 
ACCTGA