ViewGene
Locus Name:
GeneID:
Location:

GeneID:4628
TrivialName: PA14_33120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33120
PAO1 Ortholog Locus:PA2436
Sequence Length:435
Protein Length:144
Start: 2899827
Stop: 2900261
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05824.1|AE004670_12 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 144/144 (100%), Positives = 144/144 (100%)
Sequence:
ATGACGGCAGGCGGTATTCCATTCACGGGCAACGGTGCGCGGCTATCACCGGGCAGGGCCCTGCTGTGCGGG
CTGGCGCTGTTGCTGTGCGGCGGCGAGGCGCTGGCGCGGCAGTTGCCGAGCGACATGCTGGTGGGCTTCGTG
GCCAGCGCGCAGTACCCGGTCATCACCCTGAAGAAGCCCAAGCAGAGCCTGCTGCGCAGCGTGCTCACCCTG
GGGCTGGGGAAGAAGACCGTCAGCTATTCGGTGGCGCCGTCGGTGCGCATCCGCACGGCGCAGAACCTGTTC
ATCGTCTATGGCCGCATGCCCCAGCTCAAGGGCAGTTTCGTCGGCCTGAAGAGCGACAACAACGGGCAGGTC
AAGCAGATCTGGGAACTCACCGAGAAGGAAGCCCTGGACTACGTACGCCGGCCGGACGCGCGCTTCCCGCAA
TAG
Translation:
MTAGGIPFTGNGARLSPGRALLCGLALLLCGGEALARQLPSDMLVGFVASAQYPVITLKKPKQSLLRSVLTL
GLGKKTVSYSVAPSVRIRTAQNLFIVYGRMPQLKGSFVGLKSDNNGQVKQIWELTEKEALDYVRRPDARFPQ
*
AnnotationID:4634GeneID:4628
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2436
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2436 of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9257




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26398




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4628
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6996
                           PA2436_tr
                           translation of PA2436
                           144
                           99.99
                           99.99
                           0
                           729.0
     

     
     
185503
                           gb|AAG05824.1|AE004670_12
                           (AE004670) hypothetical protein PA2436 [Pseudomonas aeruginosa PAO1]
                           144
                           99.99
                           99.99
                           0
                           729.0
     

     






      

          
GC ORFID: 47630How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2436Glimmer Score: 

          
Start: 2054089Stop: 2053655

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2436 translation of PA2436Homolog Bit Score 285.0

          
Other Homologs:  t_PA2436 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGGCAGGCGGTATTCCATTCACGGGCAACGGTGCGCGGCTATCACCGGGCAGGGCCCTGCTGTGCGGG 
CTGGCGCTGTTGCTGTGCGGCGGCGAGGCGCTGGCGCGGCAGTTGCCGAGCGACATGCTGGTGGGCTTCGTG 
GCCAGCGCGCAGTACCCGGTCATCACCCTGAAGAAGCCCAAGCAGAGCCTGCTGCGCAGCGTGCTCACCCTG 
GGGCTGGGGAAGAAGACCGTCAGCTATTCGGTGGCGCCGTCGGTGCGCATCCGCACGGCGCAGAACCTGTTC 
ATCGTCTATGGCCGCATGCCCCAGCTCAAGGGCAGTTTCGTCGGCCTGAAGAGCGACAACAACGGGCAGGTC 
AAGCAGATCTGGGAACTCACCGAGAAGGAAGCCCTGGACTACGTACGCCGGCCGGACGCGCGCTTCCCGCAA 
TAG