ViewGene
Locus Name:
GeneID:
Location:

GeneID:4627
TrivialName: PA14_35060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35060
PAO1 Ortholog Locus:PA2282
Sequence Length:429
Protein Length:142
Start: 3122326
Stop: 3121898
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05670.1|AE004654_1 (AE004654) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/142 (99%), Positives = 142/142 (100%)
Sequence:
ATGATAGCAAAGTGGACTGCGGCGCTGCTGATGGGCGCGCTGGCGTGGGGATCCTGCACGGCGCAGGCCGAA
CAGGCGCGGCCGCCAGTCGCCGACAAGGTGGTGGCCTATCAGGGCCAGCAGGGGCTCAAGGTCTGGACCCTG
CGTATCGGCGAAGCGGCGGCCGGCGAAGCGCTGTTGCAGGTCGAAGGTCTGGACCACGACTGGGACCGCCTG
ATCCACAAGGTAAAGGTGGAAAAGAGCGCCAGGGACAGTCGCTACTCCACCGAACTGAACGGCAGCAAGTAT
GTGATCCTGATCGTGCGCGACGGCTGGGGCGAGCTCTACCTGCCCGGCGAACAGCAGACGCGGCAGGTCGCC
TATAGCGAGTCGCTGTCATCCGCAGGCGAGCCCCAGGCATTCCTGACCGACTACCTCGAGCAGAAATAA
Translation:
MIAKWTAALLMGALAWGSCTAQAEQARPPVADKVVAYQGQQGLKVWTLRIGEAAAGEALLQVEGLDHDWDRL
IHKVKVEKSARDSRYSTELNGSKYVILIVRDGWGELYLPGEQQTRQVAYSESLSSAGEPQAFLTDYLEQK*
AnnotationID:4633GeneID:4627
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 09:09:18
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2282
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9255




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26396




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4627
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6995
                           PA2282_tr
                           translation of PA2282
                           142
                           99.29
                           99.99
                           0
                           730.0
     

     
     
185502
                           gb|AAG05670.1|AE004654_1
                           (AE004654) hypothetical protein PA2282 [Pseudomonas aeruginosa PAO1]
                           142
                           99.29
                           99.99
                           0
                           730.0
     

     






      

          
GC ORFID: 47629How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2282Glimmer Score: 

          
Start: 1831590Stop: 1832018

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2282 translation of PA2282Homolog Bit Score 285.0

          
Other Homologs:  t_PA2282 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATAGCAAAGTGGACTGCGGCGCTGCTGATGGGCGCGCTGGCGTGGGGATCCTGCACGGCGCAGGCCGAA 
CAGGCGCGGCCGCCAGTCGCCGACAAGGTGGTGGCCTATCAGGGCCAGCAGGGGCTCAAGGTCTGGACCCTG 
CGTATCGGCGAAGCGGCGGCCGGCGAAGCGCTGTTGCAGGTCGAAGGTCTGGACCACGACTGGGACCGCCTG 
ATCCACAAGGTAAAGGTGGAAAAGAGCGCCAGGGACAGTCGCTACTCCACCGAACTGAACGGCAGCAAGTAT 
GTGATCCTGATCGTGCGCGACGGCTGGGGCGAGCTCTACCTGCCCGGCGAACAGCAGACGCGGCAGGTCGCC 
TATAGCGAGTCGCTGTCATCCGCAGGCGAGCCCCAGGCATTCCTGACCGACTACCTCGAGCAGAAATAA