ViewGene
Locus Name:
GeneID:
Location:

GeneID:4626
TrivialName: PA14_51740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51740
PAO1 Ortholog Locus:PA0970
Sequence Length:441
Protein Length:146
Start: 4596969
Stop: 4596529
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04359.1|AE004530_12 (AE004530) TolR protein [Pseudomonas aeruginosa PAO1]
Identities = 146/146 (100%), Positives = 146/146 (100%)
Sequence:
ATGGCAAGGGTTCGTCACAAGCGCAAGCCGGTCGCGGAAATGAACGTGGTGCCTTACATCGACGTGATGCTG
GTACTGCTGGTGATTTTCATGGTGACCGCACCGATGCTCAACCAGGGGGTCAAGGTCGACCTGCCGAAGGTG
TCCAGCGAGGCGTTGCCTCAGGACAACAACAAGCAGGTCCTGACCCTTTCGGTGAAAGCCGACGGTTCCTAT
TACTGGAACGTCGGCAGCGAAGTGGATACTGAAAAACAGACCGATAGTGCCGTGTCGTTGGAGCAGATGACC
GATGCAGTCACCAAGATCATGAGTGCCCGTCCGGACACCCAGGTATTCATCCGCGGCGACAAGGCGGTGAAC
TATGGTGCGGTGGTTGGCGCCATGGGTGCCTTGCAGCAGGCCGGTGTGCCCAACGTCGGGTTGATTACCGAG
GCCCCCTGA
Translation:
MARVRHKRKPVAEMNVVPYIDVMLVLLVIFMVTAPMLNQGVKVDLPKVSSEALPQDNNKQVLTLSVKADGSY
YWNVGSEVDTEKQTDSAVSLEQMTDAVTKIMSARPDTQVFIRGDKAVNYGAVVGAMGALQQAGVPNVGLITE
AP*
AnnotationID:4632GeneID:4626
AnnotatorUID: danlee
Modification Date/Time: 2004-05-12 13:01:54
Gene Name:tolR
Confidence Code:1
GeneProduct:TolR protein
Cell Localization:(4) Inner membrane protein
Synonyms:PA0970
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0848, pfam02472
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0848, ExbD, Biopolymer transport protein. Score: 131, 4e-32
pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. Score: 78.3, 3e-16






   
Genomic Context:
tolQRAB (Pseudomonas aeruginosa)






   
Comment:


















    ReferenceID:9253




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26394




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32066




  
Author/Investigator(s):
        Dennis JJ, Lafontaine ER, Sokol PA.





  
Title:
        Identification and characterization of the tolQRA genes of Pseudomonas aeruginosa.




  
PubMed:
        97113525


MedLine:
        




    
Source:
J Bacteriol. 1996 Dec;178(24):7059-68.






    
Reference Type:Journal 







    
Data:


    		




 
URL:

















    ReferenceID:32067




  
Author/Investigator(s):
        Lafontaine ER, Sokol PA.





  
Title:
        Effects of iron and temperature on expression of the Pseudomonas aeruginosa tolQRA genes: role of the ferric uptake regulator.




  
PubMed:
        98268995


MedLine:
        




    
Source:
J Bacteriol. 1998 Jun;180(11):2836-41.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4626
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6994
                           PA0970_tr
                           translation of PA0970
                           146
                           99.99
                           99.99
                           0
                           729.0
     

     
     
185490
                           gb|AAG04359.1|AE004530_12
                           (AE004530) TolR protein [Pseudomonas aeruginosa PAO1]
                           146
                           99.99
                           99.99
                           0
                           729.0
     

     
     
185491
                           gb|AAC44659.1|
                           (U39558) TolR [Pseudomonas aeruginosa]
                           146
                           99.99
                           99.99
                           0
                           729.0
     

     
     
185492
                           gb|AAN66844.1|AE016313_3
                           (AE016778) biopolymer transport protein TolR [Pseudomonas putida KT2440]
                           150
                           82.00
                           90.66
                           4
                           613.0
     

     
     
185493
                           emb|CAB50779.1|
                           (X74218) TolR protein [Pseudomonas putida]
                           150
                           82.00
                           90.66
                           4
                           613.0
     

     






      

          
GC ORFID: 47628How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0970Glimmer Score: 

          
Start: 356938Stop: 357378

          
Length: 441


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0970 translation of PA0970Homolog Bit Score 285.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4691 (ORF: BLASTX 223.0), t_PA0970 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCAAGGGTTCGTCACAAGCGCAAGCCGGTCGCGGAAATGAACGTGGTGCCTTACATCGACGTGATGCTG 
GTACTGCTGGTGATTTTCATGGTGACCGCACCGATGCTCAACCAGGGGGTCAAGGTCGACCTGCCGAAGGTG 
TCCAGCGAGGCGTTGCCTCAGGACAACAACAAGCAGGTCCTGACCCTTTCGGTGAAAGCCGACGGTTCCTAT 
TACTGGAACGTCGGCAGCGAAGTGGATACTGAAAAACAGACCGATAGTGCCGTGTCGTTGGAGCAGATGACC 
GATGCAGTCACCAAGATCATGAGTGCCCGTCCGGACACCCAGGTATTCATCCGCGGCGACAAGGCGGTGAAC 
TATGGTGCGGTGGTTGGCGCCATGGGTGCCTTGCAGCAGGCCGGTGTGCCCAACGTCGGGTTGATTACCGAG 
GCCCCCTGA