ViewGene
Locus Name:
GeneID:
Location:

GeneID:4625
TrivialName: PA14_03420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03420
PAO1 Ortholog Locus:PA0264
Sequence Length:417
Protein Length:138
Start: 313638
Stop: 313222
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03653.1|AE004464_6 (AE004464) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/138 (99%), Positives = 137/138 (99%)
Sequence:
GTGAGCAGCGGGTCTACCTCGACTACCCCGCGTGCCTGGTTGTCTGGTTCGGTTGTAACCGGAAAGTGTTGC
CTGCTGGTTATTCGAAAGGGCCAGCGCCCCGGTGTTCCATTTCCTGCGCCCTGTGCCAGCGGCGTCGCCGTT
ACCGGCCGGCCACCGTGCGCAACGGGCGGACGCGGACGAACGCGACCGCCGACAGGCGTCGGGGAGGATACG
AAAGACTCGTGCGGGAAAGGGATTGCGGACGAAACGCCACGCCGGCACCACGGCGGCCCGGCAGCGCGAAAG
GCCGGACGAGCGACGGGCAGGTCAGAAAGAGGTCATTCCAGGGGCACGCGGCCGGCTGAACTGATGCCAATT
CCCCGGTCTCCTGTTGTTGTGGCTTTGGGGGCGTTTGAAATCTCAAACGAATCCTAG
Translation:
MSSGSTSTTPRAWLSGSVVTGKCCLLVIRKGQRPGVPFPAPCASGVAVTGRPPCATGGRGRTRPPTGVGEDT
KDSCGKGIADETPRRHHGGPAARKAGRATGRSERGHSRGTRPAELMPIPRSPVVVALGAFEISNES*
AnnotationID:4631GeneID:4625
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 13:01:36
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:PA0264
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15140




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26392




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4625
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6993
                           PA0264_tr
                           translation of PA0264
                           138
                           99.27
                           99.27
                           0
                           732.0
     

     
     
185489
                           gb|AAG03653.1|AE004464_6
                           (AE004464) hypothetical protein PA0264 [Pseudomonas aeruginosa PAO1]
                           138
                           98.55
                           99.27
                           0
                           729.0
     

     






      

          
GC ORFID: 47627How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0264Glimmer Score: 

          
Start: 6114979Stop: 6114563

          
Length: 417


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0264 translation of PA0264Homolog Bit Score 286.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3024 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCAGCGGGTCTACCTCGACTACCCCGCGTGCCTGGTTGTCTGGTTCGGTTGTAACCGGAAAGTGTTGC 
CTGCTGGTTATTCGAAAGGGCCAGCGCCCCGGTGTTCCATTTCCTGCGCCCTGTGCCAGCGGCGTCGCCGTT 
ACCGGCCGGCCACCGTGCGCAACGGGCGGACGCGGACGAACGCGACCGCCGACAGGCGTCGGGGAGGATACG 
AAAGACTCGTGCGGGAAAGGGATTGCGGACGAAACGCCACGCCGGCACCACGGCGGCCCGGCAGCGCGAAAG 
GCCGGACGAGCGACGGGCAGGTCAGAAAGAGGTCATTCCAGGGGCACGCGGCCGGCTGAACTGATGCCAATT 
CCCCGGTCTCCTGTTGTTGTGGCTTTGGGGGCGTTTGAAATCTCAAACGAATCCTAG