ViewGene
Locus Name:
GeneID:
Location:

GeneID:4624
TrivialName: PA14_01170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01170
PAO1 Ortholog Locus:PA0096
Sequence Length:450
Protein Length:149
Start: 115534
Stop: 115983
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03486.1|AE004448_5 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 148/149 (99%), Positives = 148/149 (99%)
Sequence:
ATGAGTGTCGAGATCCATCTACCTGGGGCCACGACGGCCCTTCCCGCGCGCCTGGACGGCGTGGTCATCGGC
GTCCTCCTCGACGTGCCGGACGCCGCCGCTCCGGTGGTCGCCTATCCCGGTTGCCCGAGCGAGCACGGCCTG
GCGGCGGCCACCACCACTCAGCTCAGTCGCGCCGACATCGGCGCCCAGGTAGCGCTGATGTTCGTCGCCGGC
GATCCGCGCCAGCCGCTGCTGATCGGCCGCATCCAGCGCCTGCCGCAGGAAGCGCTGGCGCAACTGGACGGC
GAGCGCcTGGAGTTCAGTGCCGAACGCGAGATCGTCCTGCGCTGCGGCAAGGCCAGCATCACCCTGACCCGC
GCCGGCAAGGTGATCATCCATGGCGCCTACCTCTCCAGCCGCTCCACCGGGGTCAACCGGATCAAGGGCGGT
TCGGTGCAGATCAACTGA
Translation:
MSVEIHLPGATTALPARLDGVVIGVLLDVPDAAAPVVAYPGCPSEHGLAAATTTQLSRADIGAQVALMFVAG
DPRQPLLIGRIQRLPQEALAQLDGERLEFSAEREIVLRCGKASITLTRAGKVIIHGAYLSSRSTGVNRIKGG
SVQIN*
AnnotationID:4630GeneID:4624
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 18:06:57
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0096
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9249




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26390




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4624
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6992
                           PA0096_tr
                           translation of PA0096
                           149
                           99.32
                           99.32
                           0
                           731.0
     

     
     
185487
                           gb|AAG03486.1|AE004448_5
                           (AE004448) hypothetical protein PA0096 [Pseudomonas aeruginosa PAO1]
                           149
                           99.32
                           99.32
                           0
                           731.0
     

     
     
185488
                           dbj|BAB49508.1|
                           (AP002999) hypothetical protein [Mesorhizobium loti]
                           152
                           39.47
                           55.92
                           15
                           266.0
     

     






      

          
GC ORFID: 47626How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0096Glimmer Score: 

          
Start: 5916873Stop: 5917322

          
Length: 450


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0096 translation of PA0096Homolog Bit Score 286.0

          
Other Homologs:  t_PA0096 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGTCGAGATCCATCTACCTGGGGCCACGACGGCCCTTCCCGCGCGCCTGGACGGCGTGGTCATCGGC 
GTCCTCCTCGACGTGCCGGACGCCGCCGCTCCGGTGGTCGCCTATCCCGGTTGCCCGAGCGAGCACGGCCTG 
GCGGCGGCCACCACCACTCAGCTCAGTCGCGCCGACATCGGCGCCCAGGTAGCGCTGATGTTCGTCGCCGGC 
GATCCGCGCCAGCCGCTGCTGATCGGCCGCATCCAGCGCCTGCCGCAGGAAGCGCTGGCGCAACTGGACGGC 
GAGCGCcTGGAGTTCAGTGCCGAACGCGAGATCGTCCTGCGCTGCGGCAAGGCCAGCATCACCCTGACCCGC 
GCCGGCAAGGTGATCATCCATGGCGCCTACCTCTCCAGCCGCTCCACCGGGGTCAACCGGATCAAGGGCGGT 
TCGGTGCAGATCAACTGA