ViewGene
Locus Name:
GeneID:
Location:

GeneID:4623
TrivialName: PA14_58830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58830
PAO1 Ortholog Locus:PA4534
Sequence Length:426
Protein Length:141
Start: 5240813
Stop: 5240388
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07922.1|AE004867_8 (AE004867) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGCAGCTTCGCAGCGTCATCGCCGCCGATCACCCGGCACTCTTCGCGCTGTGGTCGCGAACGCCAGGTATC
CGCCTCCGTGCGGAGGACGCCTATCCCTTCTTCCTCGCCTACCTTCAACGCAACCCCGGGCTGAGCCTGCTG
GTCGAAACCGAAGGGGAGGTGATCGCCTGCCTGATGGCCGGGCATGACGGTCGCCGTGGTTACCTCCAGCAC
CTGGTGGTCGATCCCGGTTATCGAGGGCTGGGGCTGGCGCGGCGGATGCTCGACGAAGTGCTGGCGCGTCTG
GCGAGGGAGGGGATCGGCAAATCCCATGTCTTCGTCCTGGATGCCGCCGAGGAGGCCCAGGCATTCTGGCGA
GCCCAGTCGGACTGGGAGCGGCGCAAGGACATCCAGGTATTTTCCACTCGGGAGGGACACGCGTGA
Translation:
MQLRSVIAADHPALFALWSRTPGIRLRAEDAYPFFLAYLQRNPGLSLLVETEGEVIACLMAGHDGRRGYLQH
LVVDPGYRGLGLARRMLDEVLARLAREGIGKSHVFVLDAAEEAQAFWRAQSDWERRKDIQVFSTREGHA*
AnnotationID:4629GeneID:4623
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 17:05:28
Gene Name:
Confidence Code:3
GeneProduct:putative acetyltransferase
Cell Localization:()
Synonyms:PA4534
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00583
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO07790.1|AE016811_31 (AE016811) Acetyltransferase [Vibrio vulnificus CMCP6]
          Length = 138

 Score =  103 bits (257), Expect = 2e-22
 Identities = 52/127 (40%), Positives = 78/127 (61%), Gaps = 1/127 (0%)

>gb|AAF96374.1| (AE004379) acetyltransferase, putative [Vibrio cholerae]
          Length = 144

 Score =  100 bits (250), Expect = 1e-21
 Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 1/132 (0%)






 
Structural Features:
pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. 
CD-Length = 82 residues,  96.3% aligned
Score = 49.5 bits (118), Expect = 3e-07
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9247




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26388




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31577




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4623_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4623
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6991
                           PA4534_tr
                           translation of PA4534
                           141
                           99.99
                           99.99
                           0
                           731.0
     

     
     
185484
                           gb|AAG07922.1|AE004867_8
                           (AE004867) hypothetical protein PA4534 [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           731.0
     

     
     
185485
                           dbj|BAC97366.1|
                           (AP005349) acetyltransferase [Vibrio vulnificus YJ016]
                           145
                           37.24
                           56.55
                           5
                           263.0
     

     
     
185486
                           gb|AAO07790.1|AE016811_31
                           (AE016811) Acetyltransferase [Vibrio vulnificus CMCP6]
                           144
                           36.11
                           54.86
                           9
                           251.0
     

     






      

          
GC ORFID: 47625How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4534Glimmer Score: 

          
Start: 4504492Stop: 4504067

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4534 translation of PA4534Homolog Bit Score 286.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5466 (ORF: BLASTX 112.0), t_PA4534 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCTTCGCAGCGTCATCGCCGCCGATCACCCGGCACTCTTCGCGCTGTGGTCGCGAACGCCAGGTATC 
CGCCTCCGTGCGGAGGACGCCTATCCCTTCTTCCTCGCCTACCTTCAACGCAACCCCGGGCTGAGCCTGCTG 
GTCGAAACCGAAGGGGAGGTGATCGCCTGCCTGATGGCCGGGCATGACGGTCGCCGTGGTTACCTCCAGCAC 
CTGGTGGTCGATCCCGGTTATCGAGGGCTGGGGCTGGCGCGGCGGATGCTCGACGAAGTGCTGGCGCGTCTG 
GCGAGGGAGGGGATCGGCAAATCCCATGTCTTCGTCCTGGATGCCGCCGAGGAGGCCCAGGCATTCTGGCGA 
GCCCAGTCGGACTGGGAGCGGCGCAAGGACATCCAGGTATTTTCCACTCGGGAGGGACACGCGTGA