ViewGene

Locus Name:
GeneID:
Location:

GeneID: 4622

TrivialName: PA14_09540

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_09540

PAO1 Ortholog Locus: PA4205

Sequence Length: 447

Protein Length: 148

Start: 820974

Stop: 820528

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG07592.1|AE004837_3 (AE004837) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 148/148 (100%), Positives = 148/148 (100%)

Sequence:

ATGCAGCGCTTCATCGATAACTCGCTCGAAAGCAACTGGCTCTGGCTGACCGCCCGGATCTGCCTGGCCCTG
ATGTTCGTCGCCTCGGGACTGGCGAAGCTGTTCGACTATCAGGCCAGCCTGGAGGAAATGCGCGCCGCCGGC
CTGGAGCCGGCCTGGCTGTTCAACATCGCCACCGCCGTGACCCTGCTGGCCGGCTCCGCGCTGGTCCTGCTG
GACCGCAAGCTATGGCTCGGCGCCGGGGCGCTGGCGGTGTTCCTGCTGCTGACCATCCTCATCGTCCACACC
TTCTGGAGCAAGACCGGCGTCGAAGCCAAGCTGGCGATGTTCTTCGCCCTCGAACACATCGCGGTGATCGGC
GGCCTGATCGCCACGGCCATCGCCAGCGCGCAACGCCAGCGGCTGCGCCAGGACGTCTCCGTGGCCGCCACC
TACCAGAAGGCCTGA

Translation:

MQRFIDNSLESNWLWLTARICLALMFVASGLAKLFDYQASLEEMRAAGLEPAWLFNIATAVTLLAGSALVLL
DRKLWLGAGALAVFLLLTILIVHTFWSKTGVEAKLAMFFALEHIAVIGGLIATAIASAQRQRLRQDVSVAAT
YQKA*

AnnotationID:4628 GeneID:4622

AnnotatorUID: diggins

Modification Date/Time: 2005-04-01 05:05:41

Gene Name: mexG

Confidence Code: 1

GeneProduct: putative membrane protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2259

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

COG2259, Predicted membrane protein 
CD-Length = 142 residues,  99.3% aligned
Score = 62.3 bits (151), Expect = 2e-11
Identities = 49/145 (33%), Positives = 69/145 (47%), Gaps = 5/145 (3%)

Genomic Context:

Comment:

ReferenceID:9245

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:26386

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36806

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 4622_cdd.html

URL:

ReferenceID:37005

Author/Investigator(s): Aendekerk S, Ghysels B, Cornelis P, Baysse C.

Title: Characterization of a new efflux pump, MexGHI-OpmD, from Pseudomonas aeruginosa that confers resistance to vanadium.

PubMed: 12177331

MedLine:

Source:

Microbiology. 2002 Aug;148(Pt 8):2371-81.

Reference Type: Journal

Data:

URL:	`http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12177331`

Homologs By Global Alignment

Gene ID:4622

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

6990 PA4205_tr translation of PA4205 148 99.99 99.99 0 731.0

185482 gb|AAG07592.1|AE004837_3 (AE004837) hypothetical protein PA4205 [Pseudomonas aeruginosa PAO1] 148 99.99 99.99 0 731.0

185483 emb|CAE92870.1| (AJ617740) hypothetical protein [Pseudomonas putida] 148 54.05 68.91 9 407.0

GC ORFID: `47624`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4205`	Glimmer Score:
Start: `4132963`	Stop: `4133409`
Length: `447`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4205 translation of PA4205`	Homolog Bit Score `286.0`
Other Homologs: `t_PA4205 (ORF: GLIMMER)`
GC ORF Sequence
`ATGCAGCGCTTCATCGATAACTCGCTCGAAAGCAACTGGCTCTGGCTGACCGCCCGGATCTGCCTGGCCCTG ATGTTCGTCGCCTCGGGACTGGCGAAGCTGTTCGACTATCAGGCCAGCCTGGAGGAAATGCGCGCCGCCGGC CTGGAGCCGGCCTGGCTGTTCAACATCGCCACCGCCGTGACCCTGCTGGCCGGCTCCGCGCTGGTCCTGCTG GACCGCAAGCTATGGCTCGGCGCCGGGGCGCTGGCGGTGTTCCTGCTGCTGACCATCCTCATCGTCCACACC TTCTGGAGCAAGACCGGCGTCGAAGCCAAGCTGGCGATGTTCTTCGCCCTCGAACACATCGCGGTGATCGGC GGCCTGATCGCCACGGCCATCGCCAGCGCGCAACGCCAGCGGCTGCGCCAGGACGTCTCCGTGGCCGCCACC TACCAGAAGGCCTGA`