ViewGene
Locus Name:
GeneID:
Location:

GeneID:4621
TrivialName: PA14_16920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16920
PAO1 Ortholog Locus:PA3668
Sequence Length:423
Protein Length:140
Start: 1450944
Stop: 1450522
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07056.1|AE004786_8 (AE004786) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/140 (100%), Positives = 140/140 (100%)
Sequence:
ATGAACCCGGTTCTCCCCGAACAGGCCCAGGAGGCACTGGACGCCTTCGGTCACACCGCCAGTTGGGAACAG
CGTGCGCGTCTGCTGCTGCAATGGGGCGAGCGCCTGGCGCCGCTCGCGGAACACGAACGCCAGGAAGAGCAT
CGCGTGCACGGTTGCGAAAGCCTGGTCTGGCTGCTCGGCGAGCAGCGCGACGGCCACTGGCGCTTCCGTGCC
GACAGCGACGCGCGCCTGATCCGCGGCCTGCTGGCGGTGCTGCTGGCACGGGTCGACGGCATCGAGACCCGC
GAACTGGCGCGCCTGGACCTCAACGACTGGTTCACCTGCCTGGGTCTTTCCCGCCAACTGTCGCCCTCGCGC
AGCAACGGCCTGAACGCCGTGCTGCAACGCATGCGCGAACTGGCCGGCCAGACCGCCGGCTGA
Translation:
MNPVLPEQAQEALDAFGHTASWEQRARLLLQWGERLAPLAEHERQEEHRVHGCESLVWLLGEQRDGHWRFRA
DSDARLIRGLLAVLLARVDGIETRELARLDLNDWFTCLGLSRQLSPSRSNGLNAVLQRMRELAGQTAG*
AnnotationID:4627GeneID:4621
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 09:09:09
Gene Name:
Confidence Code:3
GeneProduct:putative Fe-S center assembly protein
Cell Localization:(1) Cytoplasmic
Synonyms:sufE
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2166,pfam02657
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Biosynthesis of Fe-S cluster; first step
Homology:
>gb|AAO55046.1| (AE016861) sufE protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 135

 Score =  180 bits (457), Expect = 1e-45
 Identities = 88/130 (67%), Positives = 102/130 (78%)

>gb|AAO10211.1|AE016802_254 (AE016802) SufE protein probably involved in Fe-S center assembly
           [Vibrio vulnificus CMCP6]
          Length = 142

 Score =  112 bits (280), Expect = 3e-25
 Identities = 51/114 (44%), Positives = 77/114 (67%)
Structural Features:
COG2166, SufE protein probably involved in Fe-S center assembly 
CD-Length = 144 residues,  97.9% aligned
Score =  161 bits (409), Expect = 3e-41
Identities = 63/141 (44%), Positives = 87/141 (61%), Gaps = 1/141 (0%)

pfam02657, SufE, Fe-S metabolism associated domain.
CD-Length = 125 residues,  96.0% aligned
Score = 96.5 bits (240), Expect = 1e-21
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 2/121 (1%)
Genomic Context:






   
Comment:


















    ReferenceID:9243




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26384




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4621
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6989
                           PA3668_tr
                           translation of PA3668
                           140
                           99.99
                           99.99
                           0
                           732.0
     

     
     
185475
                           gb|AAG07056.1|AE004786_8
                           (AE004786) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           140
                           99.99
                           99.99
                           0
                           732.0
     

     
     
185476
                           gb|AAN67149.1|AE016343_9
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           140
                           65.00
                           77.14
                           4
                           471.0
     

     
     
185477
                           gb|AAO55046.1|
                           (AE016861) sufE protein [Pseudomonas syringae pv. tomato str. DC3000]
                           140
                           62.85
                           72.85
                           5
                           450.0
     

     
     
185481
                           gb|AAF95454.1|
                           (AE004301) conserved hypothetical protein [Vibrio cholerae O1 biovar eltor str. N16961]
                           148
                           38.51
                           56.75
                           12
                           268.0
     

     






      

          
GC ORFID: 47623How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3668Glimmer Score: 

          
Start: 3502993Stop: 3503415

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3668 translation of PA3668Homolog Bit Score 286.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4805 (ORF: BLASTX 181.0), t_PA3668 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCGGTTCTCCCCGAACAGGCCCAGGAGGCACTGGACGCCTTCGGTCACACCGCCAGTTGGGAACAG 
CGTGCGCGTCTGCTGCTGCAATGGGGCGAGCGCCTGGCGCCGCTCGCGGAACACGAACGCCAGGAAGAGCAT 
CGCGTGCACGGTTGCGAAAGCCTGGTCTGGCTGCTCGGCGAGCAGCGCGACGGCCACTGGCGCTTCCGTGCC 
GACAGCGACGCGCGCCTGATCCGCGGCCTGCTGGCGGTGCTGCTGGCACGGGTCGACGGCATCGAGACCCGC 
GAACTGGCGCGCCTGGACCTCAACGACTGGTTCACCTGCCTGGGTCTTTCCCGCCAACTGTCGCCCTCGCGC 
AGCAACGGCCTGAACGCCGTGCTGCAACGCATGCGCGAACTGGCCGGCCAGACCGCCGGCTGA