ViewGene
Locus Name:
GeneID:
Location:

GeneID:4620
TrivialName: PA14_28440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28440
PAO1 Ortholog Locus:PA2756
Sequence Length:435
Protein Length:144
Start: 2456363
Stop: 2456797
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06144.1|AE004703_10 (AE004703) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/144 (99%), Positives = 143/144 (99%)
Sequence:
GTGCGGCATTTCGATGAACGGATTGGGGTCACTATGCGGATTTTGGGGATGCTACTGGGGGCCGTCTTGCTG
GCGGGTTGTTCGACATCGACGCCCTCGCTCGACGAGACGGACCAGGTACCGAAGGAGCGTTTGTACAACTAC
CAGTTCCGTGACGACGGCGACGCCTTCCTGGTGGTTTCCCGGGACCGCGAGTTCCTCGGCAGCGTCTGCAAT
ACCCGCTTGATCATCGATAGCCGCCTGGCCGCTGAGATCCAGGCCGGCGAGAGCGCGCGTTTCCGTCTTCCG
GCGGGGCTGCGGGTGGTATCCGTGCAGGGCGATGGGATCTGCCGCGGCGAGGCGCCCAAGCAGGTGGTGCAT
GTGCAGAACGGGCAGACCACGCATTACCGGATCACCGTGGACTCCGGCCTGAACATCGGCCTGGTGCCGGGC
TGA
Translation:
MRHFDERIGVTMRILGMLLGAVLLAGCSTSTPSLDETDQVPKERLYNYQFRDDGDAFLVVSRDREFLGSVCN
TRLIIDSRLAAEIQAGESARFRLPAGLRVVSVQGDGICRGEAPKQVVHVQNGQTTHYRITVDSGLNIGLVPG
*
AnnotationID:4626GeneID:4620
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 13:01:22
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2756
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15138




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26382




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4620
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6988
                           PA2756_tr
                           translation of PA2756
                           144
                           99.30
                           99.30
                           0
                           731.0
     

     
     
185474
                           gb|AAG06144.1|AE004703_10
                           (AE004703) hypothetical protein PA2756 [Pseudomonas aeruginosa PAO1]
                           144
                           98.61
                           99.30
                           0
                           728.0
     

     






      

          
GC ORFID: 47622How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2756Glimmer Score: 

          
Start: 2497563Stop: 2497129

          
Length: 435


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2756 translation of PA2756Homolog Bit Score 286.0

          
Other Homologs:  t_PA2756 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCGGCATTTCGATGAACGGATTGGGGTCACTATGCGGATTTTGGGGATGCTACTGGGGGCCGTCTTGCTG 
GCGGGTTGTTCGACATCGACGCCCTCGCTCGACGAGACGGACCAGGTACCGAAGGAGCGTTTGTACAACTAC 
CAGTTCCGTGACGACGGCGACGCCTTCCTGGTGGTTTCCCGGGACCGCGAGTTCCTCGGCAGCGTCTGCAAT 
ACCCGCTTGATCATCGATAGCCGCCTGGCCGCTGAGATCCAGGCCGGCGAGAGCGCGCGTTTCCGTCTTCCG 
GCGGGGCTGCGGGTGGTATCCGTGCAGGGCGATGGGATCTGCCGCGGCGAGGCGCCCAAGCAGGTGGTGCAT 
GTGCAGAACGGGCAGACCACGCATTACCGGATCACCGTGGACTCCGGCCTGAACATCGGCCTGGTGCCGGGC 
TGA