ViewGene

Locus Name:
GeneID:
Location:

GeneID: 462

TrivialName: PA14_06600

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_06600

PAO1 Ortholog Locus: PA0506

Sequence Length: 1806

Protein Length: 601

Start: 574888

Stop: 576693

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG03895.1|AE004487_9 (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] Identities = 601/601 (100%), Positives = 601/601 (100%)

Sequence:

ATGCCTGATTACAAGGCCCCCTTGCGTGATATCCGTTTCGTTCGCGACGAGCTGCTGGGCTACGAAGCGCAC
TACCAGAGCCTGCCGGGCGCCGAAGACGCGACTCCCGACATGGTCAACGCCATCCTCGAGGAAGGTGCGAAG
TTCTGCGAACAGGTGATCGCTCCGCTGAACCGCGTTGGCGACCTGGAAGGCTGCACCTGGAGCGCCGACGGC
GTGAAGACCCCGACTGGCTTCAAGGAGGCCTACCAGCAGTTCGTCGAAGGCGGCTGGCCGAGCCTGGCCCAT
GACGTCGAGCACGGCGGCCAGGGTCTGCCGGAATCCCTCGGGCTGGCCATCAGCGAGATGGTCGGCCAGGCC
AACTGGTCCTGGGGCATGTACCCGGGCCTGTCCCACGGCGCCATGAACACCCTGCATGCCCACGGCACCGCC
GAGCAGCAGGCGACCTACCTGACCAAGCTGGTCTCCGGCGAGTGGACCGGCACCATGTGCCTGACCGAGCCG
CACTGCGGCACCGACCTGGGCATGCTGCGCACCAAGGCCGAGCCGCAGGCCGACGGCAGCTACAAGGTCACC
GGCACCAAGATCTTCATCTCCGCCGGCGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGC
CTGCCCGACGCCCCGCAGGGCACCAAGGGCATCTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAA
GGCAACGCCGGCGAGCGCAACGCGGTTTCCTGCGGCTCCATCGAGCACAAGATGGGTATCCACGGCAACGCC
ACCTGCGTGATGAACTTCGACGCCGCCACTGGCTTCCTGATCGGCCCGCCGAACAAGGGCCTGAACTGCATG
TTCACCTTCATGAACACCGCTCGCCTGGGTACCGCGCTGCAAGGCCTGGCCCACGCCGAAGTCGGTTTCCAG
GGCGGCATCGCCTATGCTCGCGAGCGTCTGCAGATGCGCTCGCTGACCGGTCCGAAGGCGCCCGAGAAGCCC
GCCGACCCGATCATCGTGCATCCTGACGTGCGCCGCATGCTGCTGACCATGAAGGCCTTCGCCGAAGGCAAT
CGCGCGATGCTGTACTTCGCCGCCAAGCAGGTCGACATCGTCCAGCGCAGCCAGGACGAAGAGCAGAAGAAA
GCTGCCGACTCGATGCTGGCCTTCCTCACGCCGATCGCCAAGGCGTTCATGACCGAAGTCGGCTTCGAATCC
GCCAACCACGGCGTGCAGATCTTCGGCGGCCACGGTTTCATCGCCGAGCACGGCATGGAGCAGAACGTCCGC
GACAGCCGCATCTCGATGCTGTACGAAGGCACCACCGGCGTTCAGGCCCTCGACCTGCTGGGCCGCAAGGTG
CTGATGACCCAGGGCGAGGCGCTGAAGGGCTTCACCAAGATCGTGCACAAGTTCTGCCAGGCCAACGAAGCC
AACGAAGCCGTCAAGGAATTCGTCGCTCCGCTGGCACAGCTGAACAAGGAGTGGGGCGACCTGACCATGAAG
GTCGGCATGGCCGCCATGAAGGATCGCGAGGAAGTCGGCGCCGCTTCGGTGGACTACCTGATGTACTCCGGC
TACGCCTGCCTGGCCTACTTCTGGGCCGACATGGCGCGCCTGGCCGCCGAGAAGCTGGCCGCCGGCACCGGC
GAGGAAGCCTTCTACAAGGCCAAGCTGCAGACCGCGCGCTTCTACTTCCAGCGCATCCTGCCGCGTACCCGC
GCCCACGTCGCCGCCATGCTGTCCGGCGCCAACAACCTGATGGAGATGGCCGAGGAAGATTTCGCCCTCGGT
TACTGA

Translation:

MPDYKAPLRDIRFVRDELLGYEAHYQSLPGAEDATPDMVNAILEEGAKFCEQVIAPLNRVGDLEGCTWSADG
VKTPTGFKEAYQQFVEGGWPSLAHDVEHGGQGLPESLGLAISEMVGQANWSWGMYPGLSHGAMNTLHAHGTA
EQQATYLTKLVSGEWTGTMCLTEPHCGTDLGMLRTKAEPQADGSYKVTGTKIFISAGEHDMADNIVHIVLAR
LPDAPQGTKGISLFIVPKFLPNAEGNAGERNAVSCGSIEHKMGIHGNATCVMNFDAATGFLIGPPNKGLNCM
FTFMNTARLGTALQGLAHAEVGFQGGIAYARERLQMRSLTGPKAPEKPADPIIVHPDVRRMLLTMKAFAEGN
RAMLYFAAKQVDIVQRSQDEEQKKAADSMLAFLTPIAKAFMTEVGFESANHGVQIFGGHGFIAEHGMEQNVR
DSRISMLYEGTTGVQALDLLGRKVLMTQGEALKGFTKIVHKFCQANEANEAVKEFVAPLAQLNKEWGDLTMK
VGMAAMKDREEVGAASVDYLMYSGYACLAYFWADMARLAAEKLAAGTGEEAFYKAKLQTARFYFQRILPRTR
AHVAAMLSGANNLMEMAEEDFALGY*

AnnotationID:471 GeneID:462

AnnotatorUID: diggins

Modification Date/Time: 2005-03-28 05:05:38

Gene Name:

Confidence Code: 3

GeneProduct: putative acyl-CoA dehydrogenase

Cell Localization: ()

Synonyms: PA0506

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (13) Fatty acid and phospholipid metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01153

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN65999.1|AE016228_12 (AE016775) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 601

 Score = 1120 bits (2897), Expect = 0.0
 Identities = 546/601 (90%), Positives = 569/601 (94%)

>gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 601

 Score = 1096 bits (2835), Expect = 0.0
 Identities = 529/601 (88%), Positives = 564/601 (93%)

>dbj|BAC02933.1| (AB077437) acyl-CoA dehydrogenase B [Acinetobacter sp. M-1]
          Length = 599

 Score =  780 bits (2013), Expect = 0.0
 Identities = 383/598 (64%), Positives = 466/598 (77%)

Structural Features:

cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues,  99.8% aligned
Score =  467 bits (1202), Expect = 2e-132

Genomic Context:

Comment:

ReferenceID:927

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18069

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33810

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 462_cdd.html

URL:

Homologs By Global Alignment

Gene ID:462

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

793 PA0506_tr translation of PA0506 601 99.99 99.99 0 3151.0

34138 gb|AAG03895.1|AE004487_9 (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1] 601 99.99 99.99 0 3151.0

34139 gb|AAN65999.1|AE016228_12 (AE016775) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440] 601 90.84 94.67 0 2897.0

34140 gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000] 601 88.01 93.84 0 2835.0

794 PA0507_tr translation of PA0507 601 66.72 80.36 3 2145.0

GC ORFID: `43464`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0506`	Glimmer Score:
Start: `6376230`	Stop: `6378035`
Length: `1806`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0506 translation of PA0506`	Homolog Bit Score `1218.0`
Other Homologs: `t_PA0507 (ORF: BLASTX 830.0), t_PA1284 (ORF: BLASTX 700.0), t_PA0508 (ORF: BLASTX 619.0), t_PA5187 (ORF: BLASTX 610.0), t_PA4199 (ORF: BLASTX 605.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 592.0), t_PA0506 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCTGATTACAAGGCCCCCTTGCGTGATATCCGTTTCGTTCGCGACGAGCTGCTGGGCTACGAAGCGCAC TACCAGAGCCTGCCGGGCGCCGAAGACGCGACTCCCGACATGGTCAACGCCATCCTCGAGGAAGGTGCGAAG TTCTGCGAACAGGTGATCGCTCCGCTGAACCGCGTTGGCGACCTGGAAGGCTGCACCTGGAGCGCCGACGGC GTGAAGACCCCGACTGGCTTCAAGGAGGCCTACCAGCAGTTCGTCGAAGGCGGCTGGCCGAGCCTGGCCCAT GACGTCGAGCACGGCGGCCAGGGTCTGCCGGAATCCCTCGGGCTGGCCATCAGCGAGATGGTCGGCCAGGCC AACTGGTCCTGGGGCATGTACCCGGGCCTGTCCCACGGCGCCATGAACACCCTGCATGCCCACGGCACCGCC GAGCAGCAGGCGACCTACCTGACCAAGCTGGTCTCCGGCGAGTGGACCGGCACCATGTGCCTGACCGAGCCG CACTGCGGCACCGACCTGGGCATGCTGCGCACCAAGGCCGAGCCGCAGGCCGACGGCAGCTACAAGGTCACC GGCACCAAGATCTTCATCTCCGCCGGCGAGCACGACATGGCCGACAACATCGTCCATATCGTCCTGGCCCGC CTGCCCGACGCCCCGCAGGGCACCAAGGGCATCTCGCTGTTCATCGTGCCGAAGTTCCTGCCCAACGCCGAA GGCAACGCCGGCGAGCGCAACGCGGTTTCCTGCGGCTCCATCGAGCACAAGATGGGTATCCACGGCAACGCC ACCTGCGTGATGAACTTCGACGCCGCCACTGGCTTCCTGATCGGCCCGCCGAACAAGGGCCTGAACTGCATG TTCACCTTCATGAACACCGCTCGCCTGGGTACCGCGCTGCAAGGCCTGGCCCACGCCGAAGTCGGTTTCCAG GGCGGCATCGCCTATGCTCGCGAGCGTCTGCAGATGCGCTCGCTGACCGGTCCGAAGGCGCCCGAGAAGCCC GCCGACCCGATCATCGTGCATCCTGACGTGCGCCGCATGCTGCTGACCATGAAGGCCTTCGCCGAAGGCAAT CGCGCGATGCTGTACTTCGCCGCCAAGCAGGTCGACATCGTCCAGCGCAGCCAGGACGAAGAGCAGAAGAAA GCTGCCGACTCGATGCTGGCCTTCCTCACGCCGATCGCCAAGGCGTTCATGACCGAAGTCGGCTTCGAATCC GCCAACCACGGCGTGCAGATCTTCGGCGGCCACGGTTTCATCGCCGAGCACGGCATGGAGCAGAACGTCCGC GACAGCCGCATCTCGATGCTGTACGAAGGCACCACCGGCGTTCAGGCCCTCGACCTGCTGGGCCGCAAGGTG CTGATGACCCAGGGCGAGGCGCTGAAGGGCTTCACCAAGATCGTGCACAAGTTCTGCCAGGCCAACGAAGCC AACGAAGCCGTCAAGGAATTCGTCGCTCCGCTGGCACAGCTGAACAAGGAGTGGGGCGACCTGACCATGAAG GTCGGCATGGCCGCCATGAAGGATCGCGAGGAAGTCGGCGCCGCTTCGGTGGACTACCTGATGTACTCCGGC TACGCCTGCCTGGCCTACTTCTGGGCCGACATGGCGCGCCTGGCCGCCGAGAAGCTGGCCGCCGGCACCGGC GAGGAAGCCTTCTACAAGGCCAAGCTGCAGACCGCGCGCTTCTACTTCCAGCGCATCCTGCCGCGTACCCGC GCCCACGTCGCCGCCATGCTGTCCGGCGCCAACAACCTGATGGAGATGGCCGAGGAAGATTTCGCCCTCGGT TACTGA