ViewGene

Locus Name:
GeneID:
Location:

GeneID:4619
TrivialName: PA14_48970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48970
PAO1 Ortholog Locus:PA0720
Sequence Length:435
Protein Length:144
Start: 4351919
Stop: 4351485
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04109.1|AE004507_8 (AE004507) helix destabilizing protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1]
Identities = 142/144 (98%), Positives = 143/144 (99%)
Sequence:
ATGAACATGTTTGCAACCCAAGGCGGCGTCGTCGAACTGTGGGTCACCAAGACCGACACCTACACCTCGACC
AAGACCGGGGAAATCTACGCCTCGGTCCAGTCCATCGCCCCGATCCCGGAAGGTGCCCGTGGCAACGCCAAG
GGCTTCGAGATCAGCGAATACAACATCGAGCCGACCCTGCTGGACGCCATCGTTTTCGAAGGCCAGCCGGTG
CTCTGCAAGTTCGCCAGCGTGGTCCGCCCGACCCAAGACCGTTTCGGTCGGATCACCAATACGCAAGTCCTT
GTGGATCTGCTGGCTGTGGGCGGCAAGCCGATGGCGCCGACCGCCCAAGCCCCGGCCCGCCCGCAAGCACAG
GCCCAAGCCCCGCGCCCGGCCCAGCAGCCGCAGGGCCAGGACAAACAAGACAAGTCCCCGGACGCCAAGGCG
TAA
Translation:
MNMFATQGGVVELWVTKTDTYTSTKTGEIYASVQSIAPIPEGARGNAKGFEISEYNIEPTLLDAIVFEGQPV
LCKFASVVRPTQDRFGRITNTQVLVDLLAVGGKPMAPTAQAPARPQAQAQAPRPAQQPQGQDKQDKSPDAKA
*
AnnotationID:4625GeneID:4619
AnnotatorUID: danlee
Modification Date/Time: 2005-10-03 14:02:09
Gene Name:
Confidence Code:1
GeneProduct:helix destabilizing protein of bacteriophage Pf1
Cell Localization:()
Synonyms:PA0720, Gene 5 protein
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
98% similar to DNA binding protein (HELIX-DESTABILIZING PROTEIN) [bacteriophage Pf1]
>gb|AAG04109.1|AE004507_8 (AE004507) helix destabilizing protein of bacteriophage Pf1
           [Pseudomonas aeruginosa PAO1]
          Length = 144

 Score =  286
Structural Features:
Genomic Context:
Cluster of genes from bacteriophage Pf1
Comment:
ReferenceID:9239
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26380
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4619

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6987 PA0720_tr translation of PA0720 144 98.61 99.30 0 733.0
185473 gb|AAG04109.1|AE004507_8 (AE004507) helix destabilizing protein of bacteriophage Pf1 [Pseudomonas aeruginosa PAO1] 144 98.61 99.30 0 733.0
GC ORFID: 47621How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0720Glimmer Score:
Start: 601989Stop: 602423
Length: 435
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA0720 translation of PA0720Homolog Bit Score 286.0
Other Homologs: t_PA0720 (ORF: GLIMMER)
GC ORF Sequence
ATGAACATGTTTGCAACCCAAGGCGGCGTCGTCGAACTGTGGGTCACCAAGACCGACACCTACACCTCGACC
AAGACCGGGGAAATCTACGCCTCGGTCCAGTCCATCGCCCCGATCCCGGAAGGTGCCCGTGGCAACGCCAAG
GGCTTCGAGATCAGCGAATACAACATCGAGCCGACCCTGCTGGACGCCATCGTTTTCGAAGGCCAGCCGGTG
CTCTGCAAGTTCGCCAGCGTGGTCCGCCCGACCCAAGACCGTTTCGGTCGGATCACCAATACGCAAGTCCTT
GTGGATCTGCTGGCTGTGGGCGGCAAGCCGATGGCGCCGACCGCCCAAGCCCCGGCCCGCCCGCAAGCACAG
GCCCAAGCCCCGCGCCCGGCCCAGCAGCCGCAGGGCCAGGACAAACAAGACAAGTCCCCGGACGCCAAGGCG
TAA