ViewGene
Locus Name:
GeneID:
Location:

GeneID:4618
TrivialName: PA14_19010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19010
PAO1 Ortholog Locus:PA3485
Sequence Length:438
Protein Length:145
Start: 1642135
Stop: 1641698
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06873.1|AE004769_6 (AE004769) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/145 (98%), Positives = 143/145 (98%)
Sequence:
ATGAAGACAGTCGCCCTGTTTCTCGCCAGCCTCGCCCTGCTGGCCTGCACCGCGGAGTCCGGGGTGGACTTC
GACAAGACCCTGACCCACCCGAACGGCCTGGTGGTGGAGCGCCCCGTCGGCTTCGACGCGCGGCGCAGCGCC
GAGGGCTTCCGCTTCGACGAAGGCGGCAAGCTGCGCAACCCACGCCAACTGGAGGTCCAGCGCCAGGACGCG
CCGCCCTCGCCCGACCTGGCGAGCAGGCGTCTGGGCGACGGCGAGGCGCGCTACAAGGTAGAGGAAGACGAC
GGCGGCTCCGCAGGCAGCGAATACCGCCTGTGGGCAGCCAAGCCGGCGGGCGCGCGGTGGATCGTGGTCAGC
GCCAGCGAGCAGAGCGAGGATGGCGAACCGACCTTCGCCCTGGCCTGGGCGCTGCTGGAGCGGGCCAGGTTG
CAATAG
Translation:
MKTVALFLASLALLACTAESGVDFDKTLTHPNGLVVERPVGFDARRSAEGFRFDEGGKLRNPRQLEVQRQDA
PPSPDLASRRLGDGEARYKVEEDDGGSAGSEYRLWAAKPAGARWIVVSASEQSEDGEPTFALAWALLERARL
Q*
AnnotationID:4624GeneID:4618
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 11:11:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3485
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9237




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26378




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4618
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6986
                           PA3485_tr
                           translation of PA3485
                           145
                           98.62
                           98.62
                           0
                           734.0
     

     
     
185472
                           gb|AAG06873.1|AE004769_6
                           (AE004769) hypothetical protein PA3485 [Pseudomonas aeruginosa PAO1]
                           145
                           98.62
                           98.62
                           0
                           734.0
     

     






      

          
GC ORFID: 47620How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3485Glimmer Score: 

          
Start: 3311797Stop: 3312234

          
Length: 438


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3485 translation of PA3485Homolog Bit Score 287.0

          
Other Homologs:  t_PA3485 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACAGTCGCCCTGTTTCTCGCCAGCCTCGCCCTGCTGGCCTGCACCGCGGAGTCCGGGGTGGACTTC 
GACAAGACCCTGACCCACCCGAACGGCCTGGTGGTGGAGCGCCCCGTCGGCTTCGACGCGCGGCGCAGCGCC 
GAGGGCTTCCGCTTCGACGAAGGCGGCAAGCTGCGCAACCCACGCCAACTGGAGGTCCAGCGCCAGGACGCG 
CCGCCCTCGCCCGACCTGGCGAGCAGGCGTCTGGGCGACGGCGAGGCGCGCTACAAGGTAGAGGAAGACGAC 
GGCGGCTCCGCAGGCAGCGAATACCGCCTGTGGGCAGCCAAGCCGGCGGGCGCGCGGTGGATCGTGGTCAGC 
GCCAGCGAGCAGAGCGAGGATGGCGAACCGACCTTCGCCCTGGCCTGGGCGCTGCTGGAGCGGGCCAGGTTG 
CAATAG